Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BLL42_RS17845 Genome accession   NZ_CP017886
Coordinates   3718442..3719788 (-) Length   448 a.a.
NCBI ID   WP_071553259.1    Uniprot ID   A0A1J0EMT3
Organism   Pseudomonas frederiksbergensis strain ERDD5:01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3713442..3724788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLL42_RS17830 (BLL42_17470) - 3713665..3716772 (+) 3108 WP_071553256.1 pilus assembly protein -
  BLL42_RS17835 (BLL42_17475) - 3716788..3717189 (+) 402 WP_071553257.1 type IV pilin protein -
  BLL42_RS17840 (BLL42_17480) thiO 3717247..3718347 (+) 1101 WP_071553258.1 glycine oxidase ThiO -
  BLL42_RS17845 (BLL42_17485) pilR 3718442..3719788 (-) 1347 WP_071553259.1 sigma-54 dependent transcriptional regulator Regulator
  BLL42_RS17850 (BLL42_17490) pilS 3719785..3721374 (-) 1590 WP_071553260.1 PAS domain-containing sensor histidine kinase Regulator
  BLL42_RS17855 (BLL42_17495) - 3721364..3721597 (-) 234 WP_071553261.1 PP0621 family protein -
  BLL42_RS17860 (BLL42_17500) - 3721721..3722734 (-) 1014 WP_071553262.1 outer membrane protein assembly factor BamD -
  BLL42_RS17865 (BLL42_17505) rluD 3722886..3723848 (+) 963 WP_071553263.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BLL42_RS17870 (BLL42_17510) pgeF 3723845..3724570 (+) 726 WP_071553264.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49991.64 Da        Isoelectric Point: 8.3357

>NTDB_id=203581 BLL42_RS17845 WP_071553259.1 3718442..3719788(-) (pilR) [Pseudomonas frederiksbergensis strain ERDD5:01]
MKTSPRQKVLIVDDEPDIRELLEITLGRMKLDTLSARNVGEARTLLGKERFDLCLTDMRLPDGTGLELVQHIQLTHPHVP
VAMITAYGSLDTAINALKAGAFDFLTKPVDLTRLRELVVSALRLSGAGDAANAIDRRLLGDSAPMRNLRKQIDKLARSQA
PVYVSGESGSGKELVARLIHEQGPRSSQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQEAIIDVRILCATHRYLDAEVAAGRFRQDLYYRLNVIELRVPPLRERRDDIELLA
SHVLKRLAAVSGLPAAHLHPQALDALKRYRFPGNVRELENMLERAYTLCENKQIEASDLRLTDGNCSVETGLPDLTKIDN
LEQYLENVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=203581 BLL42_RS17845 WP_071553259.1 3718442..3719788(-) (pilR) [Pseudomonas frederiksbergensis strain ERDD5:01]
TTGAAGACAAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGAACCGGATATTCGCGAACTCCTGGAAATCACCCTCGG
CCGAATGAAGCTCGACACGCTGAGCGCGCGCAATGTCGGCGAAGCCCGGACGTTGCTGGGCAAGGAGCGGTTCGACCTGT
GCCTGACCGACATGCGGTTGCCCGACGGTACCGGCCTGGAGCTGGTGCAGCACATTCAGCTGACCCATCCACATGTGCCC
GTGGCGATGATCACCGCTTATGGCAGCCTCGATACCGCCATCAACGCGTTGAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTGGACCTTACCCGACTGCGAGAACTGGTGGTCAGCGCCCTGCGTTTGTCAGGCGCGGGCGACGCTGCCAATGCCA
TCGACCGCCGGTTGCTCGGCGACTCAGCGCCCATGCGCAACCTGCGTAAACAGATCGACAAACTGGCGCGCAGCCAGGCA
CCGGTGTACGTCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGACTGATTCATGAACAAGGTCCACGCAGCAG
CCAGCCGTTTGTGCCGGTCAACTGCGGGGCGATTCCGTCCGAATTGATGGAAAGCGAATTTTTCGGTCATCGCAAAGGCA
GTTTCAGCGGTGCCATCGAAGATAAACCCGGCCTGTTCCAGGCGGCCAACGGCGGGACGCTGTTTCTCGATGAAGTGGCC
GACTTGCCGCTGGCGATGCAGGTCAAATTGCTGCGCGCGATTCAGGAGAAGGCCGTACGCAGCATCGGCGGACAACAGGA
AGCCATCATTGACGTGCGAATACTCTGCGCCACTCACAGATATCTGGACGCCGAAGTGGCCGCCGGGCGCTTTCGGCAGG
ACTTGTACTATCGGTTGAATGTGATCGAGCTGCGCGTCCCGCCGTTGCGCGAGCGCCGTGACGACATCGAACTGCTGGCC
AGTCATGTGCTCAAGCGTCTCGCGGCAGTCAGTGGCTTGCCGGCCGCCCACCTGCATCCGCAAGCCCTCGATGCGCTCAA
GCGTTACCGTTTTCCGGGCAACGTCCGCGAGCTGGAGAACATGCTCGAACGCGCGTACACCCTTTGCGAAAACAAGCAGA
TCGAAGCCAGCGACCTGCGCCTGACTGACGGTAATTGCAGCGTCGAAACCGGATTGCCGGACCTGACGAAAATCGACAAT
CTTGAGCAGTATCTGGAGAACGTCGAACGCAAACTGATTCTTCAGGCCCTCGAAGAAACCCGCTGGAACCGCACAGCGGC
GGCCCAGCGGTTGAAGCTGTCGTTTCGGTCGATGCGTTACAGGCTGAAAAAGTTAGGCTTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0EMT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

98.884

0.781
  pilR Acinetobacter baumannii strain A118

49.891

100

0.511
  luxO Vibrio cholerae strain A1552

37.33

98.661

0.368

Multiple sequence alignment