Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   BLL42_RS17850 Genome accession   NZ_CP017886
Coordinates   3719785..3721374 (-) Length   529 a.a.
NCBI ID   WP_071553260.1    Uniprot ID   A0A1J0ENE6
Organism   Pseudomonas frederiksbergensis strain ERDD5:01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3714785..3726374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLL42_RS17835 (BLL42_17475) - 3716788..3717189 (+) 402 WP_071553257.1 type IV pilin protein -
  BLL42_RS17840 (BLL42_17480) thiO 3717247..3718347 (+) 1101 WP_071553258.1 glycine oxidase ThiO -
  BLL42_RS17845 (BLL42_17485) pilR 3718442..3719788 (-) 1347 WP_071553259.1 sigma-54 dependent transcriptional regulator Regulator
  BLL42_RS17850 (BLL42_17490) pilS 3719785..3721374 (-) 1590 WP_071553260.1 PAS domain-containing sensor histidine kinase Regulator
  BLL42_RS17855 (BLL42_17495) - 3721364..3721597 (-) 234 WP_071553261.1 PP0621 family protein -
  BLL42_RS17860 (BLL42_17500) - 3721721..3722734 (-) 1014 WP_071553262.1 outer membrane protein assembly factor BamD -
  BLL42_RS17865 (BLL42_17505) rluD 3722886..3723848 (+) 963 WP_071553263.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BLL42_RS17870 (BLL42_17510) pgeF 3723845..3724570 (+) 726 WP_071553264.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58192.97 Da        Isoelectric Point: 6.6902

>NTDB_id=203582 BLL42_RS17850 WP_071553260.1 3719785..3721374(-) (pilS) [Pseudomonas frederiksbergensis strain ERDD5:01]
MIAEASSPGIKQAQRLLRLYHLYRLSIGLILVLLVSSNLDNQLLEFANGDLLRTGSWLYLILNILLLVFLQNPRQPVQIF
SLALADILLLSVLFYAAGGAPSAIGNLLIVSVAIGNTLLRRRIGLLLAAVAAIGIISLTFSLSGSHPTGANHYLQAGTLG
ALCFAAALLVQGLTRQLEDSESLAEQRASEVVSLEALNALILQRMRTGILVLDSERRVQLVNHSALSLLGHARLDGQLID
DYSTALVERLQLWLNNPTLRPQSLKVASTGLELQPSFIALGLNEQRQTLVFLEDLAQVAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLNESEELMGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSVPQRLDLKPWLEQFVCTVRDGATDR
QQIHLNAGSGPFTTLMDPDQLTQVLDNLLRNAWRHSALAHEQAEVWLTLFIDPDNQLPTLDVLDNGPGVSAEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRPDGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=203582 BLL42_RS17850 WP_071553260.1 3719785..3721374(-) (pilS) [Pseudomonas frederiksbergensis strain ERDD5:01]
GTGATCGCTGAGGCCTCAAGCCCTGGCATCAAACAGGCCCAGCGGCTGCTGCGCCTCTATCATCTCTACCGTTTAAGCAT
CGGCTTGATTCTGGTGCTGTTGGTCTCCAGCAACCTGGACAACCAGTTGCTGGAATTCGCCAACGGCGATCTGCTGCGCA
CCGGCAGCTGGTTGTACCTGATACTGAACATCCTGCTGCTGGTGTTTTTGCAGAACCCCAGACAACCCGTACAGATCTTC
AGCCTCGCGCTGGCCGACATCCTGCTGTTGTCAGTGCTGTTCTATGCCGCAGGTGGCGCCCCCAGCGCCATCGGCAATTT
GCTGATTGTGTCAGTGGCGATCGGCAATACTCTGCTGCGTCGGCGCATCGGTCTGCTGCTCGCGGCAGTCGCCGCCATCG
GCATCATTTCCCTGACTTTTTCCCTGAGCGGCAGCCACCCGACGGGGGCCAATCACTACTTGCAGGCCGGCACCCTCGGC
GCCCTGTGCTTTGCCGCAGCCTTGCTGGTGCAAGGTCTGACCCGACAACTGGAGGACAGCGAGAGCCTGGCCGAGCAGCG
CGCCAGCGAAGTGGTCAGCTTGGAAGCGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACA
GTGAGCGACGGGTTCAGTTGGTCAATCACAGCGCATTGAGCCTGCTGGGCCATGCACGCCTCGACGGCCAGCTCATCGAC
GATTACTCGACAGCCCTGGTCGAGCGCCTGCAACTCTGGCTCAACAACCCGACCTTGCGTCCACAAAGCCTGAAAGTCGC
CAGTACTGGCCTGGAACTGCAACCGAGTTTCATTGCGCTGGGCCTGAACGAACAACGTCAGACCCTGGTATTTCTCGAAG
ACCTCGCCCAGGTCGCGCAACAAGCTCAGCAACTCAAGCTTGCAGCACTGGGCCGGCTGACCGCAGGCATTGCCCATGAA
ATCCGTAATCCATTGGGTGCCATCAGCCATGCGGCGCAGTTGCTGAACGAGTCTGAGGAGCTGATGGGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCTCAACGCATGAACCGAGTGATAGAAAATGTCTTGCAGCTTTCACGCCGCCAAC
AAAGCGTACCGCAACGGCTCGACTTGAAACCGTGGCTGGAGCAGTTCGTGTGCACAGTGCGCGACGGTGCAACGGATCGC
CAACAGATTCATCTGAACGCAGGCTCAGGCCCCTTCACCACATTGATGGACCCTGACCAACTGACCCAGGTGCTCGACAA
CCTGCTGCGCAATGCCTGGCGCCACAGCGCCCTTGCGCACGAGCAGGCCGAGGTCTGGCTCACGCTGTTTATCGACCCCG
ACAACCAGCTTCCCACCCTTGATGTGCTGGACAACGGCCCCGGTGTTTCAGCGGAGCAGCAAGCACATCTGTTCGAACCG
TTCTTTACCACCAGTAGCCAGGGCACTGGCCTGGGTCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCCAGACGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0ENE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.808

98.299

0.588

Multiple sequence alignment