Detailed information NTG0203566

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: CGP93_RS08620
• Genome accession: NZ_CP022897
• Coordinates: 1713842..1714528 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 128
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1708842..1719528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGP93_RS08575 (CGP93_01584)	rpmA	1709557..1709841 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
CGP93_RS08580 (CGP93_01585)	-	1709853..1710173 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
CGP93_RS08585 (CGP93_01586)	rplU	1710179..1710487 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
CGP93_RS08590 (CGP93_01587)	mreD	1710780..1711310 (-)	531	WP_031927662.1	rod shape-determining protein MreD	-
CGP93_RS08595 (CGP93_01588)	mreC	1711310..1712152 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
CGP93_RS08600	-	1712350..1712469 (-)	120	WP_000840603.1	hypothetical protein	-
CGP93_RS08605 (CGP93_01589)	-	1712543..1713016 (-)	474	WP_001236737.1	DUF4930 family protein	-
CGP93_RS08610 (CGP93_01590)	-	1713176..1713373 (+)	198	WP_054194364.1	hypothetical protein	-
CGP93_RS08615 (CGP93_01591)	-	1713490..1713774 (-)	285	WP_000171863.1	hypothetical protein	-
CGP93_RS08620 (CGP93_01592)	ysxA/radC	1713842..1714528 (-)	687	WP_000692876.1	DNA repair protein RadC	Machinery gene
CGP93_RS08625 (CGP93_01593)	-	1714525..1715232 (-)	708	WP_000261113.1	A24 family peptidase	-
CGP93_RS08635 (CGP93_01594)	-	1715500..1716771 (-)	1272	WP_001108334.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
CGP93_RS08640 (CGP93_01595)	-	1716784..1719414 (-)	2631	WP_115385557.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=203566 CGP93_RS08620 WP_000692876.1 1713842..1714528(-) (ysxA/radC) [Staphylococcus aureus strain 128]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=203566 CGP93_RS08620 WP_000692876.1 1713842..1714528(-) (ysxA/radC) [Staphylococcus aureus strain 128]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATTGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377