NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	CGP91_RS01615	Genome accession	NZ_CP022895
Coordinates	354934..355437 (+)	Length	167 a.a.
NCBI ID	WP_000934799.1	Uniprot ID	A0A0D1JHQ1
Organism	Staphylococcus aureus strain 85
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 349934..360437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGP91_RS01580 (CGP91_00298)	spo0J	350874..351719 (+)	846	WP_001573568.1	ParB/RepB/Spo0J family partition protein	Regulator
CGP91_RS01585 (CGP91_00299)	-	351873..352754 (+)	882	WP_000373076.1	mechanosensitive ion channel family protein	-
CGP91_RS01590 (CGP91_00300)	-	352784..352987 (+)	204	WP_000157348.1	DUF951 domain-containing protein	-
CGP91_RS01595 (CGP91_00301)	ychF	352999..354096 (+)	1098	WP_001218732.1	redox-regulated ATPase YchF	-
CGP91_RS01600 (CGP91_00302)	-	354182..354373 (-)	192	WP_001052483.1	hypothetical protein	-
CGP91_RS01610 (CGP91_00303)	rpsF	354617..354913 (+)	297	WP_001261460.1	30S ribosomal protein S6	-
CGP91_RS01615 (CGP91_00304)	ssbA	354934..355437 (+)	504	WP_000934799.1	single-stranded DNA-binding protein	Machinery gene
CGP91_RS01620 (CGP91_00305)	rpsR	355489..355731 (+)	243	WP_000897044.1	30S ribosomal protein S18	-
CGP91_RS01625 (CGP91_00306)	-	355963..356682 (-)	720	WP_000400841.1	type II toxin-antitoxin system PemK/MazF family toxin	-
CGP91_RS01630 (CGP91_00307)	-	356795..358009 (-)	1215	WP_000270135.1	site-specific integrase	-
CGP91_RS01635 (CGP91_00308)	-	358284..359003 (-)	720	WP_115300110.1	helix-turn-helix transcriptional regulator	-
CGP91_RS01640 (CGP91_00309)	-	359189..359401 (+)	213	WP_044292240.1	helix-turn-helix transcriptional regulator	-
CGP91_RS01645 (CGP91_00310)	-	359402..359674 (+)	273	WP_115300111.1	helix-turn-helix domain-containing protein	-
CGP91_RS01650 (CGP91_00311)	-	359686..359832 (+)	147	WP_000784893.1	hypothetical protein	-
CGP91_RS01655 (CGP91_00312)	-	359825..360037 (+)	213	WP_001058496.1	hypothetical protein	-
CGP91_RS01660 (CGP91_00313)	-	360039..360398 (+)	360	WP_001038252.1	hypothetical protein	-

Sequence

Protein

Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305

                                >NTDB_id=203331 CGP91_RS01615 WP_000934799.1 354934..355437(+) (ssbA) [Staphylococcus aureus strain 85]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR

NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI

SDDDLPF

Nucleotide

Download Length: 504 bp

                                >NTDB_id=203331 CGP91_RS01615 WP_000934799.1 354934..355437(+) (ssbA) [Staphylococcus aureus strain 85]

ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC

GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT

TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT

AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA

TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA

AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
PDB	5XGT
PDB	7YM1
PDB	8GW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.341	100	0.689
ssb	Latilactobacillus sakei subsp. sakei 23K	54.971	100	0.563
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.473	0.371
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.365

Detailed information NTG0203331