Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DN94_07655 Genome accession   CP007565
Coordinates   1484677..1485168 (-) Length   163 a.a.
NCBI ID   AHX75518.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1479677..1490168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_07640 - 1482583..1483254 (-) 672 AHX75515.1 membrane protein -
  DN94_07645 - 1483279..1484223 (-) 945 AHX75516.1 magnesium transporter -
  DN94_07650 - 1484393..1484632 (-) 240 AHX75517.1 30S ribosomal protein S18 -
  DN94_07655 ssb 1484677..1485168 (-) 492 AHX75518.1 single-stranded DNA-binding protein Machinery gene
  DN94_07660 - 1485180..1485467 (-) 288 AHX75519.1 30S ribosomal protein S6 -
  DN94_07665 - 1486560..1487684 (+) 1125 AHX75520.1 adenine glycosylase -
  DN94_07670 - 1487861..1488454 (+) 594 AHX75521.1 transcriptional regulator -
  DN94_07675 - 1488500..1488814 (-) 315 AHX75522.1 thioredoxin -
  DN94_07680 - 1488895..1489395 (-) 501 AHX75523.1 phosphoesterase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18155.77 Da        Isoelectric Point: 4.9119

>NTDB_id=20313 DN94_07655 AHX75518.1 1484677..1485168(-) (ssb) [Streptococcus agalactiae strain 138spar]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=20313 DN94_07655 AHX75518.1 1484677..1485168(-) (ssb) [Streptococcus agalactiae strain 138spar]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTAGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCATCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.638
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.286

100

0.626
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment