Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DN94_07255 Genome accession   CP007565
Coordinates   1407035..1407724 (-) Length   229 a.a.
NCBI ID   AHX75445.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402035..1412724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_07235 - 1402838..1403740 (-) 903 AHX75441.1 primosomal protein DnaI -
  DN94_07240 - 1403737..1404912 (-) 1176 AHX75442.1 helicase loader -
  DN94_07245 - 1404912..1405391 (-) 480 AHX75443.1 NrdR family transcriptional regulator -
  DN94_07250 - 1405540..1407045 (-) 1506 AHX75444.1 ATPase -
  DN94_07255 covR 1407035..1407724 (-) 690 AHX75445.1 PhoB family transcriptional regulator Regulator
  DN94_07260 - 1407955..1408488 (-) 534 AHX75446.1 DNA-binding protein -
  DN94_07265 - 1408593..1409483 (-) 891 AHX75447.1 heat shock protein HtpX -
  DN94_07270 - 1409504..1410058 (-) 555 AHX75448.1 membrane protein -
  DN94_07275 - 1410186..1410899 (+) 714 AHX75449.1 16S rRNA methyltransferase -
  DN94_07280 - 1410914..1412293 (+) 1380 AHX75450.1 ATPase V -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26561.58 Da        Isoelectric Point: 4.8094

>NTDB_id=20311 DN94_07255 AHX75445.1 1407035..1407724(-) (covR) [Streptococcus agalactiae strain 138spar]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHIWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=20311 DN94_07255 AHX75445.1 1407035..1407724(-) (covR) [Streptococcus agalactiae strain 138spar]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTCTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATTACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGAGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTCATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCGCTAACAAAACGTGAA
TTTGATTTGTTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATATTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.039

100

0.79
  covR Lactococcus lactis subsp. lactis strain DGCC12653

65.789

99.563

0.655
  vicR Streptococcus mutans UA159

45.455

100

0.459
  micA Streptococcus pneumoniae Cp1015

43.043

100

0.432

Multiple sequence alignment