Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BK049_RS08390 Genome accession   NZ_CP017786
Coordinates   1661473..1662015 (+) Length   180 a.a.
NCBI ID   WP_008359104.1    Uniprot ID   A0AAC9IFJ4
Organism   Bacillus xiamenensis strain VV3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1656473..1667015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS08365 (BK049_08365) - 1657476..1657886 (-) 411 WP_008359097.1 hypothetical protein -
  BK049_RS08370 (BK049_08370) - 1657902..1659221 (-) 1320 WP_071168275.1 hydrolase -
  BK049_RS08375 (BK049_08375) - 1659517..1659723 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  BK049_RS08380 (BK049_08380) ychF 1659940..1661040 (+) 1101 WP_008359102.1 redox-regulated ATPase YchF -
  BK049_RS08385 (BK049_08385) rpsF 1661149..1661436 (+) 288 WP_008359103.1 30S ribosomal protein S6 -
  BK049_RS08390 (BK049_08390) ssbA 1661473..1662015 (+) 543 WP_008359104.1 single-stranded DNA-binding protein SsbA Machinery gene
  BK049_RS08395 (BK049_08395) rpsR 1662056..1662295 (+) 240 WP_008359105.1 30S ribosomal protein S18 -
  BK049_RS08400 (BK049_08400) - 1662527..1663513 (+) 987 WP_071168276.1 ring-cleaving dioxygenase -
  BK049_RS08405 (BK049_08405) - 1663510..1664121 (+) 612 WP_071168277.1 alpha/beta hydrolase -
  BK049_RS08410 (BK049_08410) wrbA 1664181..1664804 (+) 624 WP_051009120.1 NAD(P)H:quinone oxidoreductase -
  BK049_RS08415 (BK049_08415) katX 1664853..1666442 (-) 1590 WP_008359115.1 catalase KatX -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=202916 BK049_RS08390 WP_008359104.1 1661473..1662015(+) (ssbA) [Bacillus xiamenensis strain VV3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQSPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=202916 BK049_RS08390 WP_008359104.1 1661473..1662015(+) (ssbA) [Bacillus xiamenensis strain VV3]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCGGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAATGTGGCTAACTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAG
TGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAATCAAAGTCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGGAATAGCTTCAAT
GATGACCCATTTGCGAATGACGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

58.889

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.638

100

0.372

Multiple sequence alignment