Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BK055_RS12770 Genome accession   NZ_CP017775
Coordinates   2625126..2625461 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9912D     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620126..2630461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS12750 (BK055_12750) gcvT 2620732..2621832 (-) 1101 WP_071181846.1 glycine cleavage system aminomethyltransferase GcvT -
  BK055_RS12755 (BK055_12755) - 2622256..2623926 (+) 1671 WP_017418135.1 DEAD/DEAH box helicase -
  BK055_RS12760 (BK055_12760) - 2623948..2624742 (+) 795 WP_014305407.1 YqhG family protein -
  BK055_RS12765 (BK055_12765) sinI 2624919..2625092 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  BK055_RS12770 (BK055_12770) sinR 2625126..2625461 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BK055_RS12775 (BK055_12775) tasA 2625509..2626294 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  BK055_RS12780 (BK055_12780) sipW 2626359..2626943 (-) 585 WP_014418370.1 signal peptidase I SipW -
  BK055_RS12785 (BK055_12785) tapA 2626915..2627586 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  BK055_RS12790 (BK055_12790) - 2627845..2628174 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BK055_RS12795 (BK055_12795) - 2628215..2628394 (-) 180 WP_003153093.1 YqzE family protein -
  BK055_RS12800 (BK055_12800) comGG 2628451..2628828 (-) 378 WP_025649851.1 competence type IV pilus minor pilin ComGG Machinery gene
  BK055_RS12805 (BK055_12805) comGF 2628829..2629224 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  BK055_RS12810 (BK055_12810) comGE 2629238..2629552 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  BK055_RS12815 (BK055_12815) comGD 2629536..2629973 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  BK055_RS12820 (BK055_12820) comGC 2629963..2630229 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=202815 BK055_RS12770 WP_003153104.1 2625126..2625461(+) (sinR) [Bacillus velezensis strain 9912D]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=202815 BK055_RS12770 WP_003153104.1 2625126..2625461(+) (sinR) [Bacillus velezensis strain 9912D]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment