Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSJM300_16775 Genome accession   CP003725
Coordinates   3651950..3652432 (-) Length   160 a.a.
NCBI ID   AFN79412.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3646950..3657432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_16750 - 3646972..3648318 (-) 1347 AFN79407.1 TonB system biopolymer transport component -
  PSJM300_16755 - 3648315..3649085 (-) 771 AFN79408.1 chromosome segregation ATPase -
  PSJM300_16760 - 3649278..3649970 (+) 693 AFN79409.1 OmpW family protein -
  PSJM300_16765 - 3650133..3651062 (-) 930 AFN79410.1 epimerase -
  PSJM300_16770 - 3651055..3651939 (-) 885 AFN79411.1 dTDP-4-dehydrorhamnose reductase -
  PSJM300_16775 ssb 3651950..3652432 (-) 483 AFN79412.1 single-stranded DNA-binding protein Machinery gene
  PSJM300_16780 - 3652606..3653973 (-) 1368 AFN79413.1 major facilitator family transporter -
  PSJM300_16785 uvrA 3654184..3657033 (+) 2850 AFN79414.1 excinuclease ABC subunit A -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17916.99 Da        Isoelectric Point: 5.9540

>NTDB_id=20272 PSJM300_16775 AFN79412.1 3651950..3652432(-) (ssb) [Pseudomonas stutzeri DSM 10701]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGSMQLLGSRGGSSDEPRQPRPQREPQQAARPAPSQPKPAQQPAPDYDSFDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=20272 PSJM300_16775 AFN79412.1 3651950..3652432(-) (ssb) [Pseudomonas stutzeri DSM 10701]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCGACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTGCAGGAGCGCACCGAGT
GGCACCGCGTGGTGCTGTTCGGCAAGGTCGCCGAGATTGCCGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACATCGAA
GGACGCCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTGGTGGATATGAACGGCAG
CATGCAGCTGCTCGGCAGCCGCGGCGGCAGCTCCGATGAGCCGCGCCAGCCGCGTCCGCAGCGCGAGCCGCAGCAGGCCG
CACGCCCGGCACCGTCCCAGCCGAAGCCTGCTCAGCAGCCTGCTCCGGACTACGACAGCTTCGACGACGATATTCCTTTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.056

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.995

100

0.538
  ssb Neisseria meningitidis MC58

45.198

100

0.5
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.5

Multiple sequence alignment