Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BJN34_RS02480 | Genome accession | NZ_CP017757 |
| Coordinates | 520431..520991 (+) | Length | 186 a.a. |
| NCBI ID | WP_078195200.1 | Uniprot ID | A0A1U9UJC8 |
| Organism | Cupriavidus necator strain NH9 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 520431..541624 | 520431..520991 | within | 0 |
Gene organization within MGE regions
Location: 520431..541624
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BJN34_RS02480 (BJN34_02455) | ssb | 520431..520991 (+) | 561 | WP_078195200.1 | single-stranded DNA-binding protein | Machinery gene |
| BJN34_RS02490 (BJN34_02460) | - | 521459..521845 (+) | 387 | WP_078195201.1 | hypothetical protein | - |
| BJN34_RS02495 (BJN34_02465) | - | 521854..523926 (-) | 2073 | WP_078195202.1 | recombinase family protein | - |
| BJN34_RS02500 (BJN34_02470) | - | 524063..524395 (-) | 333 | WP_078195203.1 | DUF6788 family protein | - |
| BJN34_RS02505 (BJN34_02475) | - | 524449..524736 (-) | 288 | WP_078195204.1 | DUF5372 family protein | - |
| BJN34_RS02510 (BJN34_02480) | - | 524766..524972 (+) | 207 | Protein_489 | reverse transcriptase domain-containing protein | - |
| BJN34_RS02515 (BJN34_02485) | - | 524993..527209 (-) | 2217 | WP_234824884.1 | recombinase family protein | - |
| BJN34_RS38790 (BJN34_02490) | - | 527199..527363 (-) | 165 | WP_234824885.1 | DUF2264 domain-containing protein | - |
| BJN34_RS02520 (BJN34_02495) | - | 527673..528524 (+) | 852 | WP_206363358.1 | reverse transcriptase domain-containing protein | - |
| BJN34_RS02525 (BJN34_02500) | arsH | 528710..529474 (-) | 765 | WP_078195207.1 | arsenical resistance protein ArsH | - |
| BJN34_RS02530 (BJN34_02505) | arsC | 529471..529896 (-) | 426 | WP_078195208.1 | arsenate reductase (glutaredoxin) | - |
| BJN34_RS02535 (BJN34_02510) | arsB | 529908..530978 (-) | 1071 | WP_078195209.1 | ACR3 family arsenite efflux transporter | - |
| BJN34_RS02540 (BJN34_02515) | - | 530975..531319 (-) | 345 | WP_078195210.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| BJN34_RS02545 (BJN34_02520) | - | 531402..531743 (-) | 342 | WP_078195211.1 | YnfA family protein | - |
| BJN34_RS02550 (BJN34_02525) | - | 531941..532990 (+) | 1050 | WP_234824886.1 | porin | - |
| BJN34_RS02555 (BJN34_02530) | - | 533006..533989 (+) | 984 | WP_078195213.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| BJN34_RS02560 (BJN34_02535) | - | 533986..534918 (+) | 933 | WP_078195214.1 | BMP family ABC transporter substrate-binding protein | - |
| BJN34_RS02565 (BJN34_02540) | - | 534947..536119 (-) | 1173 | WP_078195215.1 | GGDEF domain-containing protein | - |
| BJN34_RS02570 (BJN34_02545) | - | 536536..536874 (+) | 339 | WP_078195216.1 | RcnB family protein | - |
| BJN34_RS02575 (BJN34_02550) | - | 536955..537203 (-) | 249 | WP_078195217.1 | hypothetical protein | - |
| BJN34_RS39220 (BJN34_02555) | - | 537758..538918 (+) | 1161 | WP_078195218.1 | collagen-like protein | - |
| BJN34_RS02585 (BJN34_02560) | - | 539122..539628 (+) | 507 | WP_078195219.1 | ion channel | - |
| BJN34_RS02590 (BJN34_02565) | - | 539731..541221 (+) | 1491 | WP_078195220.1 | DUF308 domain-containing protein | - |
| BJN34_RS02595 (BJN34_02570) | - | 541271..541624 (+) | 354 | WP_078195221.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 186 a.a. Molecular weight: 19176.89 Da Isoelectric Point: 5.9517
>NTDB_id=202554 BJN34_RS02480 WP_078195200.1 520431..520991(+) (ssb) [Cupriavidus necator strain NH9]
MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQSGEMKEATEWHRISFFGKIAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGDEGGYGGGAGGAGGGGGYSREASGGGGYGGGRGGQAGAQGGG
QAGGAARRPQQPASNGFEDMDDDIPF
MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQSGEMKEATEWHRISFFGKIAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGDEGGYGGGAGGAGGGGGYSREASGGGGYGGGRGGQAGAQGGG
QAGGAARRPQQPASNGFEDMDDDIPF
Nucleotide
Download Length: 561 bp
>NTDB_id=202554 BJN34_RS02480 WP_078195200.1 520431..520991(+) (ssb) [Cupriavidus necator strain NH9]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGACCAATATCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGAGCGGCGAGATGAAGGAGGCCACCGAATGGC
ACCGCATCTCGTTCTTCGGCAAGATCGCCGAAATCGCCGGTCAGTACCTGCGCAAGGGATCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACTCCACTGAAATCGTTGCCGACCAGATGCAGAT
GCTGGGCTCGCGCCAGGGTGGCGGCGGTGGCGGTGACGAAGGCGGCTACGGTGGCGGTGCGGGCGGTGCGGGCGGTGGCG
GTGGCTACAGCCGCGAAGCATCGGGCGGTGGTGGCTACGGCGGCGGCCGCGGTGGTCAGGCGGGCGCCCAGGGTGGCGGT
CAGGCCGGTGGCGCTGCGCGCCGTCCGCAGCAGCCGGCATCGAATGGTTTCGAGGATATGGACGACGATATTCCGTTCTG
A
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGACCAATATCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGAGCGGCGAGATGAAGGAGGCCACCGAATGGC
ACCGCATCTCGTTCTTCGGCAAGATCGCCGAAATCGCCGGTCAGTACCTGCGCAAGGGATCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACTCCACTGAAATCGTTGCCGACCAGATGCAGAT
GCTGGGCTCGCGCCAGGGTGGCGGCGGTGGCGGTGACGAAGGCGGCTACGGTGGCGGTGCGGGCGGTGCGGGCGGTGGCG
GTGGCTACAGCCGCGAAGCATCGGGCGGTGGTGGCTACGGCGGCGGCCGCGGTGGTCAGGCGGGCGCCCAGGGTGGCGGT
CAGGCCGGTGGCGCTGCGCGCCGTCCGCAGCAGCCGGCATCGAATGGTTTCGAGGATATGGACGACGATATTCCGTTCTG
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50.521 |
100 |
0.522 |
| ssb | Vibrio cholerae strain A1552 |
50.259 |
100 |
0.522 |
| ssb | Neisseria meningitidis MC58 |
43.243 |
99.462 |
0.43 |
| ssb | Neisseria gonorrhoeae MS11 |
43.243 |
99.462 |
0.43 |