Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BKK81_RS04380 Genome accession   NZ_CP017751
Coordinates   966303..966854 (+) Length   183 a.a.
NCBI ID   WP_071010929.1    Uniprot ID   -
Organism   Cupriavidus sp. USMAHM13 isolate pure     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 961303..971854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKK81_RS04370 (BKK81_04370) uvrA 961480..964344 (-) 2865 WP_071010927.1 excinuclease ABC subunit UvrA -
  BKK81_RS04375 (BKK81_04375) - 964766..966013 (+) 1248 WP_071010928.1 MFS transporter -
  BKK81_RS04380 (BKK81_04380) ssb 966303..966854 (+) 552 WP_071010929.1 single-stranded DNA-binding protein Machinery gene
  BKK81_RS04385 (BKK81_04385) copD 967027..967950 (-) 924 WP_071010930.1 copper homeostasis membrane protein CopD -
  BKK81_RS04390 (BKK81_04390) copC 967955..968341 (-) 387 WP_071010931.1 copper homeostasis periplasmic binding protein CopC -
  BKK81_RS04395 (BKK81_04395) - 968373..969410 (-) 1038 WP_071016043.1 copper resistance protein B -
  BKK81_RS04400 (BKK81_04400) - 969437..971281 (-) 1845 WP_071010932.1 copper resistance system multicopper oxidase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19104.92 Da        Isoelectric Point: 5.9417

>NTDB_id=202512 BKK81_RS04380 WP_071010929.1 966303..966854(+) (ssb) [Cupriavidus sp. USMAHM13 isolate pure]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYRDKASGDMKELTEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGARQGMGGGGDDMGGGGGGGGYGGGREASGGGYGGGRGQGGGQGGGQGGGQQ
GGARRQQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=202512 BKK81_RS04380 WP_071010929.1 966303..966854(+) (ssb) [Cupriavidus sp. USMAHM13 isolate pure]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGCGCGGACCCGGAAACCCGCTACATGCCCAGCGGCGACGC
CGTGACCAACATCCGCCTGGCTACCACCGACCGCTATCGCGACAAGGCCAGCGGCGACATGAAGGAGCTGACCGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTACATCGAAGGG
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACAGCACCGAGATCGTCGCCGACCAGATGCAGAT
GCTGGGGGCGCGCCAGGGTATGGGTGGCGGCGGTGACGACATGGGCGGCGGTGGCGGTGGTGGTGGCTACGGCGGCGGCC
GCGAGGCCTCGGGCGGTGGCTACGGCGGTGGCCGCGGCCAGGGCGGCGGTCAGGGCGGTGGCCAGGGCGGTGGCCAGCAG
GGCGGCGCACGGCGCCAGCAGCAGGCACCGTCGAACGGCTTCGAGGACATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.439

100

0.552
  ssb Glaesserella parasuis strain SC1401

48.108

100

0.486
  ssb Neisseria meningitidis MC58

43.646

98.907

0.432
  ssb Neisseria gonorrhoeae MS11

43.646

98.907

0.432

Multiple sequence alignment