Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BI197_RS18640 Genome accession   NZ_CP017747
Coordinates   3857950..3858468 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain SYBC H47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3852950..3863468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS18610 - 3854152..3854532 (-) 381 WP_071392547.1 VOC family protein -
  BI197_RS18615 - 3854588..3855526 (-) 939 WP_070082670.1 LacI family DNA-binding transcriptional regulator -
  BI197_RS18620 xth 3855589..3856347 (-) 759 WP_071392548.1 exodeoxyribonuclease III -
  BI197_RS18625 - 3856374..3856901 (-) 528 WP_071392549.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  BI197_RS18630 - 3856898..3857479 (-) 582 WP_071392550.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  BI197_RS18635 rpsR 3857667..3857906 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  BI197_RS18640 ssbA 3857950..3858468 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  BI197_RS18645 rpsF 3858508..3858795 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  BI197_RS18650 ychF 3858907..3860007 (-) 1101 WP_071392551.1 redox-regulated ATPase YchF -
  BI197_RS18655 - 3860134..3862137 (-) 2004 WP_071392552.1 molybdopterin-dependent oxidoreductase -
  BI197_RS18660 - 3862184..3862390 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=202486 BI197_RS18640 WP_004392979.1 3857950..3858468(-) (ssbA) [Bacillus velezensis strain SYBC H47]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=202486 BI197_RS18640 WP_004392979.1 3857950..3858468(-) (ssbA) [Bacillus velezensis strain SYBC H47]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment