Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BI197_RS16085 Genome accession   NZ_CP017747
Coordinates   3354024..3354713 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SYBC H47     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3349024..3359713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS16050 - 3349222..3349704 (-) 483 WP_071392362.1 flagellar protein FlgN -
  BI197_RS16055 flgM 3349719..3349985 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BI197_RS16060 - 3350055..3350474 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BI197_RS16065 comFC 3350548..3351237 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  BI197_RS16070 - 3351243..3351527 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  BI197_RS16075 comFA 3351585..3352970 (-) 1386 WP_071392364.1 DEAD/DEAH box helicase Machinery gene
  BI197_RS16080 - 3353078..3353926 (-) 849 WP_071392365.1 DegV family protein -
  BI197_RS16085 degU 3354024..3354713 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BI197_RS16090 degS 3354790..3355953 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  BI197_RS16095 - 3356176..3356823 (+) 648 WP_060657503.1 YigZ family protein -
  BI197_RS16100 - 3356828..3358003 (+) 1176 WP_071392366.1 LCP family protein -
  BI197_RS16105 - 3358093..3359169 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=202477 BI197_RS16085 WP_003219701.1 3354024..3354713(-) (degU) [Bacillus velezensis strain SYBC H47]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=202477 BI197_RS16085 WP_003219701.1 3354024..3354713(-) (degU) [Bacillus velezensis strain SYBC H47]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment