Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BI197_RS16065 Genome accession   NZ_CP017747
Coordinates   3350548..3351237 (-) Length   229 a.a.
NCBI ID   WP_199445943.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYBC H47     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3345548..3356237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS16030 fliW 3345639..3346070 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  BI197_RS16035 - 3346100..3346669 (-) 570 WP_003151397.1 DUF6470 family protein -
  BI197_RS16040 flgL 3346760..3347677 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BI197_RS16045 flgK 3347689..3349206 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  BI197_RS16050 - 3349222..3349704 (-) 483 WP_071392362.1 flagellar protein FlgN -
  BI197_RS16055 flgM 3349719..3349985 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BI197_RS16060 - 3350055..3350474 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BI197_RS16065 comFC 3350548..3351237 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  BI197_RS16070 - 3351243..3351527 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  BI197_RS16075 comFA 3351585..3352970 (-) 1386 WP_071392364.1 DEAD/DEAH box helicase Machinery gene
  BI197_RS16080 - 3353078..3353926 (-) 849 WP_071392365.1 DegV family protein -
  BI197_RS16085 degU 3354024..3354713 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BI197_RS16090 degS 3354790..3355953 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25392.13 Da        Isoelectric Point: 8.2217

>NTDB_id=202475 BI197_RS16065 WP_199445943.1 3350548..3351237(-) (comFC) [Bacillus velezensis strain SYBC H47]
MNCLLCDSPISGSLTWRSLFSLTPEQEVCSLCSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAVCFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=202475 BI197_RS16065 WP_199445943.1 3350548..3351237(-) (comFC) [Bacillus velezensis strain SYBC H47]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAGGTTCATTGACTTGGAGATCTCTGTTTTCTCTGACGCCCGAGCAAGA
GGTATGCAGCTTATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGTTTGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment