Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BI197_RS16075 Genome accession   NZ_CP017747
Coordinates   3351585..3352970 (-) Length   461 a.a.
NCBI ID   WP_071392364.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYBC H47     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3346585..3357970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS16040 flgL 3346760..3347677 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  BI197_RS16045 flgK 3347689..3349206 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  BI197_RS16050 - 3349222..3349704 (-) 483 WP_071392362.1 flagellar protein FlgN -
  BI197_RS16055 flgM 3349719..3349985 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BI197_RS16060 - 3350055..3350474 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  BI197_RS16065 comFC 3350548..3351237 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  BI197_RS16070 - 3351243..3351527 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  BI197_RS16075 comFA 3351585..3352970 (-) 1386 WP_071392364.1 DEAD/DEAH box helicase Machinery gene
  BI197_RS16080 - 3353078..3353926 (-) 849 WP_071392365.1 DegV family protein -
  BI197_RS16085 degU 3354024..3354713 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BI197_RS16090 degS 3354790..3355953 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  BI197_RS16095 - 3356176..3356823 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52522.86 Da        Isoelectric Point: 10.0968

>NTDB_id=202476 BI197_RS16075 WP_071392364.1 3351585..3352970(-) (comFA) [Bacillus velezensis strain SYBC H47]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLKRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=202476 BI197_RS16075 WP_071392364.1 3351585..3352970(-) (comFA) [Bacillus velezensis strain SYBC H47]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGATGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGAAGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment