Detailed information NTG0202401

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CHY23_RS07280
• Genome accession: NZ_CP022715
• Coordinates: 1477309..1478313 (+)
• Length: 334 a.a.
• NCBI ID: WP_005596193.1
• Uniprot ID: A0ABM6X217
• Organism: Actinobacillus pleuropneumoniae strain KL 16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1472309..1483313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHY23_RS07260 (CHY23_01458)	potA	1473813..1474928 (+)	1116	WP_005596185.1	spermidine/putrescine ABC transporter ATP-binding protein PotA	-
CHY23_RS07265 (CHY23_01459)	potB	1474915..1475781 (+)	867	WP_005596186.1	spermidine/putrescine ABC transporter permease PotB	-
CHY23_RS07270 (CHY23_01460)	potC	1475781..1476548 (+)	768	WP_012262759.1	spermidine/putrescine ABC transporter permease PotC	-
CHY23_RS07275 (CHY23_01461)	ruvA	1476685..1477290 (+)	606	WP_005596191.1	Holliday junction branch migration protein RuvA	Machinery gene
CHY23_RS07280 (CHY23_01462)	ruvB	1477309..1478313 (+)	1005	WP_005596193.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CHY23_RS07285 (CHY23_01463)	ubiG	1478370..1479074 (-)	705	WP_005596195.1	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	-
CHY23_RS07290 (CHY23_01464)	gyrA	1479254..1481944 (+)	2691	WP_117374099.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36942.37 Da
• Isoelectric Point: 4.7887

>NTDB_id=202401 CHY23_RS07280 WP_005596193.1 1477309..1478313(+) (ruvB) [Actinobacillus pleuropneumoniae strain KL 16]
MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTSIVKRSADCLNLNLSPNAAYEVARRSRGTPRIANRLLRRVRDYADVRNNG
VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYAHLGIAKLD

Nucleotide

• Length: 1005 bp

>NTDB_id=202401 CHY23_RS07280 WP_005596193.1 1477309..1478313(+) (ruvB) [Actinobacillus pleuropneumoniae strain KL 16]
ATGATTGAAGCAGATAGAATAATTAGTGCCTCGCCGAAGCGTGAGGAGGAAGTGATTGATCGTGCGATTCGTCCTAAATT
ATTGGCGGATTATGTCGGTCAGCCGTCTGTACGAGAGCAGATGGAGATCTTTATTAAAGCGGCAAAATTGCGTGATGAGG
CGCTAGATCACTTATTAATTTTTGGTCCGCCGGGATTGGGTAAAACCACCTTAGCTAATATTGTTGCCAACGAAATGGGC
GTGAATATTCGTACCACTTCCGGACCGGTGCTGGAGAAAGCGGGCGATTTGGCGGCAATGTTGACTAATTTAGAGCCTTA
TGACGTGTTATTTATTGATGAGATCCACCGCTTATCACCGGCAATTGAAGAAGTGCTGTATCCGGCGATGGAAGATTATC
AGCTGGATATTATGATTGGCGAAGGACCGGCGGCACGTTCAATTAAACTGGATTTACCGCCGTTTACCTTAGTGGGGGCA
ACCACCCGTGCCGGCTCACTGACTTCTCCGTTACGTGACCGCTTTGGTATTGTACAGCGTTTAGAGTTTTACTCGGTGGA
TGATTTAACCTCGATCGTAAAACGCAGTGCCGATTGCTTAAACTTAAATTTATCGCCGAATGCTGCTTATGAAGTGGCTC
GCCGTTCACGAGGCACACCACGTATTGCCAATCGTTTATTACGCCGTGTGCGAGATTATGCCGATGTACGTAATAACGGC
GTGATTACCTCTGATATTGCCAAACAAGCGTTAGCAATGCTTGATGTAGATTCCGAAGGCTTTGATTTTATGGATATCAA
GTTACTGCAAGCGATTGTGGAACGTTTTGACGGAGGCCCGGTCGGCTTAGATAACTTAGCCGCAGCAATTGGTGAGGAGC
GAGATACGATTGAAGACGTGCTTGAACCTTATTTGATTCAGCAGGGTTTTTTGCAACGAACACCGCGAGGACGTATTGCC
ACCAGCCGAACTTATGCGCATTTAGGCATTGCGAAGTTAGATTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.346	97.006	0.605
ruvB	Streptococcus pneumoniae TIGR4	59.568	97.006	0.578
ruvB	Streptococcus pneumoniae R6	59.568	97.006	0.578
ruvB	Streptococcus pneumoniae D39	59.568	97.006	0.578
ruvB	Synechocystis sp. PCC 6803	54.658	96.407	0.527
ruvB	Helicobacter pylori 26695	54.952	93.713	0.515