Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BKP64_RS12305 | Genome accession | NZ_CP017715 |
| Coordinates | 2660066..2660596 (-) | Length | 176 a.a. |
| NCBI ID | WP_070970473.1 | Uniprot ID | A0A1D9GMS4 |
| Organism | Marinobacter salinus strain Hb8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2655066..2665596
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKP64_RS12280 (BKP64_12280) | mshL | 2655551..2657278 (-) | 1728 | WP_070970459.1 | pilus (MSHA type) biogenesis protein MshL | - |
| BKP64_RS12285 (BKP64_12285) | - | 2657278..2657562 (-) | 285 | WP_227515385.1 | hypothetical protein | - |
| BKP64_RS12290 (BKP64_12290) | gspM | 2657624..2658316 (-) | 693 | WP_070970465.1 | type II secretion system protein GspM | - |
| BKP64_RS12295 (BKP64_12295) | - | 2658316..2658921 (-) | 606 | WP_070970468.1 | PilN domain-containing protein | - |
| BKP64_RS12300 (BKP64_12300) | - | 2658918..2659850 (-) | 933 | WP_070970471.1 | biogenesis protein MshI | - |
| BKP64_RS12305 (BKP64_12305) | ssb | 2660066..2660596 (-) | 531 | WP_070970473.1 | single-stranded DNA-binding protein | Machinery gene |
| BKP64_RS12310 (BKP64_12310) | - | 2660655..2662025 (-) | 1371 | WP_070970476.1 | MFS transporter | - |
| BKP64_RS12315 (BKP64_12315) | uvrA | 2662210..2665032 (+) | 2823 | WP_070970479.1 | excinuclease ABC subunit UvrA | - |
| BKP64_RS12320 (BKP64_12320) | rplQ | 2665145..2665543 (-) | 399 | WP_070970482.1 | 50S ribosomal protein L17 | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19149.19 Da Isoelectric Point: 4.9464
>NTDB_id=202206 BKP64_RS12305 WP_070970473.1 2660066..2660596(-) (ssb) [Marinobacter salinus strain Hb8]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMNQGAPAGRPQQSGSNAPAGQQGNNPPPQQQSGGYSQPTQ
GSMPEPVDDFDDDIPF
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMNQGAPAGRPQQSGSNAPAGQQGNNPPPQQQSGGYSQPTQ
GSMPEPVDDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=202206 BKP64_RS12305 WP_070970473.1 2660066..2660596(-) (ssb) [Marinobacter salinus strain Hb8]
ATGGCACGAGGCGTAAACAAGGTCATTCTTATCGGGAACCTGGGCCAGGACCCGGATACCCGCTATACCCCCAACGGCAA
TGCTGTGGTGAATCTTAATCTTGCCACTGACGAGAGTTACAAGGACCGTCAGACTGGTCAGATGGTGCCTAAAACCGAAT
GGCACCGCATCGTGCTGTTTGGCAAGGTGGCTGAGGTTGCCGGGCAGTACCTGCGTAAAGGGTCCAAGGTTTATATTGAA
GGTAAACTGCAAACCCGGAAGTGGCAGAACAAGGAAGGTCAGGACGTCTACACCACTGAGGTCGTGGTGGATATCAACGG
CCAGATGCAGATGCTGGATAGCCGCGGTGGCGAAGGTGGTATGAATCAGGGCGCACCTGCTGGTCGTCCCCAGCAATCAG
GTAGCAATGCCCCCGCTGGCCAGCAGGGCAATAACCCGCCGCCCCAGCAGCAGTCCGGTGGCTACAGCCAGCCTACTCAG
GGCAGTATGCCTGAGCCGGTGGATGATTTTGATGACGATATTCCGTTCTAG
ATGGCACGAGGCGTAAACAAGGTCATTCTTATCGGGAACCTGGGCCAGGACCCGGATACCCGCTATACCCCCAACGGCAA
TGCTGTGGTGAATCTTAATCTTGCCACTGACGAGAGTTACAAGGACCGTCAGACTGGTCAGATGGTGCCTAAAACCGAAT
GGCACCGCATCGTGCTGTTTGGCAAGGTGGCTGAGGTTGCCGGGCAGTACCTGCGTAAAGGGTCCAAGGTTTATATTGAA
GGTAAACTGCAAACCCGGAAGTGGCAGAACAAGGAAGGTCAGGACGTCTACACCACTGAGGTCGTGGTGGATATCAACGG
CCAGATGCAGATGCTGGATAGCCGCGGTGGCGAAGGTGGTATGAATCAGGGCGCACCTGCTGGTCGTCCCCAGCAATCAG
GTAGCAATGCCCCCGCTGGCCAGCAGGGCAATAACCCGCCGCCCCAGCAGCAGTCCGGTGGCTACAGCCAGCCTACTCAG
GGCAGTATGCCTGAGCCGGTGGATGATTTTGATGACGATATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.923 |
100 |
0.602 |
| ssb | Glaesserella parasuis strain SC1401 |
52.66 |
100 |
0.563 |
| ssb | Neisseria meningitidis MC58 |
45.109 |
100 |
0.472 |
| ssb | Neisseria gonorrhoeae MS11 |
44.134 |
100 |
0.449 |