NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	CGP84_RS08580	Genome accession	NZ_CP022682
Coordinates	1708052..1708738 (-)	Length	228 a.a.
NCBI ID	WP_000692876.1	Uniprot ID	-
Organism	Staphylococcus aureus strain 78
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1703052..1713738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGP84_RS08535 (CGP84_01575)	rpmA	1703641..1703925 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
CGP84_RS08540 (CGP84_01576)	-	1703937..1704257 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
CGP84_RS08545 (CGP84_01577)	rplU	1704263..1704571 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
CGP84_RS08550 (CGP84_01578)	mreD	1704990..1705520 (-)	531	WP_031927662.1	rod shape-determining protein MreD	-
CGP84_RS08555 (CGP84_01579)	mreC	1705520..1706362 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
CGP84_RS08560	-	1706560..1706679 (-)	120	WP_000840603.1	hypothetical protein	-
CGP84_RS08565 (CGP84_01580)	-	1706753..1707226 (-)	474	WP_001236737.1	DUF4930 family protein	-
CGP84_RS08570	-	1707386..1707583 (+)	198	WP_054194364.1	hypothetical protein	-
CGP84_RS08575 (CGP84_01581)	-	1707700..1707984 (-)	285	WP_000171863.1	hypothetical protein	-
CGP84_RS08580 (CGP84_01582)	ysxA/radC	1708052..1708738 (-)	687	WP_000692876.1	DNA repair protein RadC	Machinery gene
CGP84_RS08585 (CGP84_01583)	-	1708735..1709442 (-)	708	WP_000261113.1	A24 family peptidase	-
CGP84_RS08595 (CGP84_01584)	-	1709710..1710981 (-)	1272	WP_001108334.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
CGP84_RS08600 (CGP84_01585)	-	1710994..1713624 (-)	2631	WP_000425345.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25297.21 Da Isoelectric Point: 6.7572

                                >NTDB_id=202091 CGP84_RS08580 WP_000692876.1 1708052..1708738(-) (ysxA/radC) [Staphylococcus aureus strain 78]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=202091 CGP84_RS08580 WP_000692876.1 1708052..1708738(-) (ysxA/radC) [Staphylococcus aureus strain 78]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATTGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0202091