Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BS1321_RS12365 Genome accession   NZ_CP017704
Coordinates   2586388..2586915 (+) Length   175 a.a.
NCBI ID   WP_057914129.1    Uniprot ID   A0A8B5XQG9
Organism   Peribacillus simplex NBRC 15720 = DSM 1321     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2581388..2591915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS1321_RS12335 (BS1321_12135) - 2581744..2582445 (+) 702 WP_063234305.1 DUF554 domain-containing protein -
  BS1321_RS12340 (BS1321_12140) yyaC 2582498..2583133 (-) 636 WP_063234304.1 spore protease YyaC -
  BS1321_RS12345 (BS1321_12145) - 2583526..2584362 (+) 837 WP_063234303.1 mechanosensitive ion channel family protein -
  BS1321_RS12350 (BS1321_12150) - 2584383..2584580 (+) 198 WP_034316158.1 DUF951 domain-containing protein -
  BS1321_RS12355 (BS1321_12155) ychF 2584747..2585847 (+) 1101 WP_063234302.1 redox-regulated ATPase YchF -
  BS1321_RS12360 (BS1321_12160) rpsF 2586035..2586319 (+) 285 WP_034316153.1 30S ribosomal protein S6 -
  BS1321_RS12365 (BS1321_12165) ssbA 2586388..2586915 (+) 528 WP_057914129.1 single-stranded DNA-binding protein Machinery gene
  BS1321_RS12370 (BS1321_12170) rpsR 2586963..2587202 (+) 240 WP_053348323.1 30S ribosomal protein S18 -
  BS1321_RS12375 (BS1321_12175) - 2587436..2588383 (+) 948 WP_063234301.1 YybS family protein -
  BS1321_RS12380 (BS1321_12180) - 2588425..2590395 (+) 1971 WP_063234300.1 DHH family phosphoesterase -
  BS1321_RS12385 (BS1321_12185) rplI 2590392..2590841 (+) 450 WP_063234299.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19360.06 Da        Isoelectric Point: 4.8282

>NTDB_id=202041 BS1321_RS12365 WP_057914129.1 2586388..2586915(+) (ssbA) [Peribacillus simplex NBRC 15720 = DSM 1321]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRGFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQKSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=202041 BS1321_RS12365 WP_057914129.1 2586388..2586915(+) (ssbA) [Peribacillus simplex NBRC 15720 = DSM 1321]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTGGTTTTACGAATCAGCAGGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTGGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGCGGTCAAAAAAGTTATGGCAATAATAACGGAAATGACA
ACAACTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTTGCA
AATGACGGTAAGACCATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B5XQG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.294

100

0.377
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.571

0.371

Multiple sequence alignment