Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AP3564_RS03875 Genome accession   NZ_CP017703
Coordinates   798221..798607 (-) Length   128 a.a.
NCBI ID   WP_094244693.1    Uniprot ID   -
Organism   Aeribacillus pallidus strain KCTC3564     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 793221..803607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP3564_RS03870 (AP3564_03765) - 794651..797398 (+) 2748 WP_094244692.1 DEAD/DEAH box helicase -
  AP3564_RS03875 (AP3564_03770) ssbB 798221..798607 (-) 387 WP_094244693.1 single-stranded DNA-binding protein Machinery gene
  AP3564_RS03880 (AP3564_03775) - 798755..799150 (-) 396 WP_094244694.1 hypothetical protein -
  AP3564_RS03885 (AP3564_03780) - 799436..799813 (+) 378 WP_157727876.1 helix-turn-helix domain-containing protein -
  AP3564_RS03890 (AP3564_03785) - 799887..800345 (+) 459 WP_094244695.1 YwpF-like family protein -
  AP3564_RS03895 (AP3564_03790) - 800702..800962 (-) 261 WP_094244696.1 hypothetical protein -
  AP3564_RS03900 (AP3564_03795) fabZ 801441..801863 (-) 423 WP_094244697.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AP3564_RS03905 (AP3564_03800) - 802063..802332 (-) 270 WP_335642839.1 DNA-directed RNA polymerase subunit beta -
  AP3564_RS03910 (AP3564_03805) - 802516..803346 (-) 831 WP_094244699.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14374.21 Da        Isoelectric Point: 8.4922

>NTDB_id=201981 AP3564_RS03875 WP_094244693.1 798221..798607(-) (ssbB) [Aeribacillus pallidus strain KCTC3564]
MINHVTLVGRLTKDPEIRYTSEGAPVANITLAVSRNFRNAAGEIDTDFVHCTLWRRTAENTANYCRKGSIVGVIGRIQTR
NYENSEGKKVYVTEVVADSVRFMGTPPQRMRARELFDPESASEQPEAK

Nucleotide


Download         Length: 387 bp        

>NTDB_id=201981 AP3564_RS03875 WP_094244693.1 798221..798607(-) (ssbB) [Aeribacillus pallidus strain KCTC3564]
GTGATCAACCATGTGACGCTCGTCGGTCGATTAACGAAAGATCCTGAAATCCGCTATACAAGTGAAGGGGCTCCTGTTGC
CAATATTACGCTGGCTGTGAGCCGCAACTTTCGCAATGCGGCAGGGGAAATCGACACAGATTTTGTTCATTGTACACTTT
GGAGACGAACAGCTGAAAATACTGCAAATTACTGCCGGAAAGGATCGATCGTTGGCGTAATCGGAAGAATTCAAACGCGC
AACTATGAAAACAGCGAGGGCAAAAAAGTGTACGTAACAGAAGTTGTTGCGGATTCCGTTCGATTTATGGGCACTCCGCC
GCAAAGAATGCGGGCAAGAGAACTTTTCGATCCGGAATCCGCATCTGAACAGCCTGAGGCAAAGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

68.75

87.5

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.136

80.469

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

80.469

0.461
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.119

85.156

0.367

Multiple sequence alignment