Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SPG_0901 Genome accession   CP001015
Coordinates   869845..870798 (+) Length   317 a.a.
NCBI ID   ACF56052.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 864845..875798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0897 secG 865777..866010 (+) 234 ACF55558.1 preprotein translocase SecG subunit -
  SPG_0898 rnr 866112..868466 (+) 2355 ACF55844.1 ribonuclease R -
  SPG_0899 - 868429..868896 (+) 468 ACF55103.1 SsrA-binding protein -
  SPG_0900 tehB 868912..869772 (+) 861 ACF55414.1 Tellurite resistance protein TehB -
  SPG_0901 coiA 869845..870798 (+) 954 ACF56052.1 competence protein CoiA Machinery gene
  SPG_0902 pepF 870817..872619 (+) 1803 ACF55893.1 group B oligopeptidase PepB Regulator
  SPG_0903 - 872621..873334 (+) 714 ACF56487.1 conserved hypothetical protein -
  SPG_0904 - 873401..874060 (+) 660 ACF55717.1 foldase protein PrsA -
  SPG_0905 - 874044..874169 (+) 126 ACF56364.1 foldase protein PrsA -
  SPG_0906 - 874205..874336 (+) 132 ACF55742.1 foldase protein PrsA -
  SPG_0907 - 874525..874794 (-) 270 ACF55288.1 IS3-Spn1, transposase -
  SPG_0908 - 874794..874928 (-) 135 ACF56066.1 IS3-Spn1, transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38275.95 Da        Isoelectric Point: 8.9845

>NTDB_id=20194 SPG_0901 ACF56052.1 869845..870798(+) (coiA) [Streptococcus pneumoniae G54]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKFLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKKQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=20194 SPG_0901 ACF56052.1 869845..870798(+) (coiA) [Streptococcus pneumoniae G54]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATTCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAAACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.054

100

0.991
  coiA Streptococcus pneumoniae Rx1

99.054

100

0.991
  coiA Streptococcus pneumoniae D39

99.054

100

0.991
  coiA Streptococcus pneumoniae R6

99.054

100

0.991
  coiA Streptococcus mitis NCTC 12261

89.274

100

0.893
  coiA Lactococcus lactis subsp. cremoris KW2

41.975

100

0.429

Multiple sequence alignment