Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GD3902_RS09340 Genome accession   NZ_CP017694
Coordinates   1855284..1855778 (+) Length   164 a.a.
NCBI ID   WP_011888458.1    Uniprot ID   A0A0Q0YUR8
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1850284..1860778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS09310 (GD3902_09105) yyaC 1850284..1850907 (-) 624 WP_029761077.1 spore protease YyaC -
  GD3902_RS09315 (GD3902_09110) - 1851081..1851980 (+) 900 WP_029761078.1 mechanosensitive ion channel family protein -
  GD3902_RS09320 (GD3902_09115) - 1851999..1852196 (+) 198 WP_008880819.1 DUF951 domain-containing protein -
  GD3902_RS18785 - 1852263..1852385 (+) 123 WP_374717259.1 hypothetical protein -
  GD3902_RS18790 - 1852944..1853411 (+) 468 WP_008880817.1 hypothetical protein -
  GD3902_RS18795 - 1853398..1853541 (+) 144 WP_374717258.1 hypothetical protein -
  GD3902_RS09330 (GD3902_09125) ychF 1853641..1854741 (+) 1101 WP_008880816.1 redox-regulated ATPase YchF -
  GD3902_RS09335 (GD3902_09130) rpsF 1854967..1855254 (+) 288 WP_008880815.1 30S ribosomal protein S6 -
  GD3902_RS09340 (GD3902_09135) ssbA 1855284..1855778 (+) 495 WP_011888458.1 single-stranded DNA-binding protein Machinery gene
  GD3902_RS09345 (GD3902_09140) rpsR 1855818..1856054 (+) 237 WP_008880812.1 30S ribosomal protein S18 -
  GD3902_RS09350 (GD3902_09145) - 1856132..1857058 (+) 927 WP_008880811.1 YybS family protein -
  GD3902_RS09355 (GD3902_09150) - 1857105..1859081 (+) 1977 WP_029761080.1 DHH family phosphoesterase -
  GD3902_RS09360 (GD3902_09155) rplI 1859078..1859527 (+) 450 WP_008880809.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18394.33 Da        Isoelectric Point: 4.7055

>NTDB_id=201886 GD3902_RS09340 WP_011888458.1 1855284..1855778(+) (ssbA) [Geobacillus thermodenitrificans strain KCTC3902]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYYGDPFPFGQDQNHRYPNEKGIGRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=201886 GD3902_RS09340 WP_011888458.1 1855284..1855778(+) (ssbA) [Geobacillus thermodenitrificans strain KCTC3902]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACATTTACGCTCGCAGTCAACCGCCCGTTCACAAACCAGCAGGGCGAGCGTGAAGCTGATTTTATCCAATGTGTTGTTT
GGCGTCGCCAGGCAGAAAACGTCGCTAACTTCTTAAAAAAAGGAAGTTTAGCCGGAGTGGACGGCCGGCTGCAAACTCGC
AGCTATGAAAACCAAGAAGGCCGGCGCGTGTATGTGACGGAAGTGGTGGCTGATAACGTCCAATTTCTTGAGCCAAAAGG
AAGCAACGAGCAACGTGGGGCAGCAGCAGGCGGCTACTATGGGGATCCGTTCCCATTCGGACAAGATCAGAACCACCGAT
ACCCGAACGAAAAAGGGATTGGCCGCATTGATGAAGATCCTTTCGCCAATGACGGCCAACCGATCGATATTTCTGACGAC
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0YUR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68

100

0.726
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.634

0.415
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.366

Multiple sequence alignment