Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SSU05_1596 Genome accession   CP000407
Coordinates   1518203..1518886 (-) Length   227 a.a.
NCBI ID   ABP90562.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513203..1523886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1591 - 1513244..1513408 (-) 165 ABP90557.1 hypothetical protein -
  SSU05_1592 - 1513714..1514214 (-) 501 ABP90558.1 transposase of IS200 family -
  SSU05_1593 - 1514353..1516371 (-) 2019 ABP90559.1 ABC transporter membrane-spanning permease - unknown substrate -
  SSU05_1594 - 1516364..1517122 (-) 759 ABP90560.1 ABC-type antimicrobial peptide transport system, ATPase component -
  SSU05_1595 - 1517218..1518210 (-) 993 ABP90561.1 Signal transduction histidine kinase -
  SSU05_1596 braR 1518203..1518886 (-) 684 ABP90562.1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Regulator
  SSU05_1597 - 1519056..1520237 (+) 1182 ABP90563.1 hypothetical protein -
  SSU05_1598 - 1520252..1521376 (-) 1125 ABP90564.1 Aspartate/tyrosine/aromatic aminotransferase -
  SSU05_1599 - 1521523..1522284 (-) 762 ABP90565.1 Uncharacterized protein conserved in bacteria -
  SSU05_1600 - 1522294..1523805 (-) 1512 ABP90566.1 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26581.80 Da        Isoelectric Point: 4.5525

>NTDB_id=20188 SSU05_1596 ABP90562.1 1518203..1518886(-) (braR) [Streptococcus suis 05ZYH33]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELDLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=20188 SSU05_1596 ABP90562.1 1518203..1518886(-) (braR) [Streptococcus suis 05ZYH33]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTTAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTTAACATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGATCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.706

96.035

0.458
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment