Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GTID1_RS10470 Genome accession   NZ_CP017690
Coordinates   2109277..2109771 (+) Length   164 a.a.
NCBI ID   WP_011888458.1    Uniprot ID   A0A0Q0YUR8
Organism   Geobacillus thermodenitrificans strain ID-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2104277..2114771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTID1_RS10435 (GTID1_10205) yyaC 2104278..2104901 (-) 624 WP_008880821.1 spore protease YyaC -
  GTID1_RS10440 (GTID1_10210) - 2105075..2105974 (+) 900 WP_008880820.1 mechanosensitive ion channel family protein -
  GTID1_RS10445 (GTID1_10215) - 2105993..2106190 (+) 198 WP_008880819.1 DUF951 domain-containing protein -
  GTID1_RS20115 - 2106291..2106377 (+) 87 WP_412101691.1 hypothetical protein -
  GTID1_RS20120 - 2106402..2106734 (+) 333 WP_418251500.1 hypothetical protein -
  GTID1_RS10455 - 2106937..2107428 (+) 492 WP_236927469.1 hypothetical protein -
  GTID1_RS10460 (GTID1_10225) ychF 2107634..2108734 (+) 1101 WP_008880816.1 redox-regulated ATPase YchF -
  GTID1_RS10465 (GTID1_10230) rpsF 2108960..2109247 (+) 288 WP_008880815.1 30S ribosomal protein S6 -
  GTID1_RS10470 (GTID1_10235) ssbA 2109277..2109771 (+) 495 WP_011888458.1 single-stranded DNA-binding protein Machinery gene
  GTID1_RS10475 (GTID1_10240) rpsR 2109811..2110047 (+) 237 WP_008880812.1 30S ribosomal protein S18 -
  GTID1_RS10480 (GTID1_10245) - 2110125..2111051 (+) 927 WP_008880811.1 YybS family protein -
  GTID1_RS10485 (GTID1_10250) - 2111098..2113074 (+) 1977 WP_029761080.1 DHH family phosphoesterase -
  GTID1_RS10490 (GTID1_10255) rplI 2113071..2113520 (+) 450 WP_011888453.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18394.33 Da        Isoelectric Point: 4.7055

>NTDB_id=201838 GTID1_RS10470 WP_011888458.1 2109277..2109771(+) (ssbA) [Geobacillus thermodenitrificans strain ID-1]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFIQCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQEGRRVYVTEVVADNVQFLEPKGSNEQRGAAAGGYYGDPFPFGQDQNHRYPNEKGIGRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=201838 GTID1_RS10470 WP_011888458.1 2109277..2109771(+) (ssbA) [Geobacillus thermodenitrificans strain ID-1]
ATGATTAACCGCGTCATTTTGGTCGGCAGGTTAACGAGAGATCCGGAGTTGCGCTACACTCCAAGCGGAGTGGCTGTTGC
CACATTTACGCTCGCGGTCAACCGCCCGTTCACAAACCAGCAGGGCGAGCGTGAAGCTGATTTTATCCAATGTGTTGTTT
GGCGTCGCCAGGCAGAAAACGTCGCTAACTTCTTAAAAAAAGGAAGCTTAGCCGGAGTGGACGGCCGGCTGCAAACTCGC
AGCTATGAAAACCAAGAAGGCCGGCGCGTGTATGTGACGGAAGTGGTGGCTGATAACGTCCAATTTCTTGAGCCAAAAGG
AAGCAACGAGCAACGTGGGGCAGCAGCAGGCGGCTACTATGGGGATCCGTTCCCATTCGGACAAGATCAGAACCACCGAT
ACCCGAACGAAAAAGGGATTGGCCGCATTGATGAAGATCCTTTCGCCAATGACGGCCAACCGATCGATATTTCTGACGAC
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0YUR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68

100

0.726
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.634

0.415
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.366

Multiple sequence alignment