Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SSU05_1353 Genome accession   CP000407
Coordinates   1295336..1295932 (-) Length   198 a.a.
NCBI ID   ABP90319.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1290336..1300932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1349 - 1291436..1292194 (-) 759 ABP90315.1 Permease of the major facilitator superfamily -
  SSU05_1350 - 1292225..1293598 (-) 1374 ABP90316.1 UDP-N-acetylmuramyl pentapeptide synthase -
  SSU05_1351 - 1293715..1293951 (-) 237 ABP90317.1 hypothetical protein -
  SSU05_1352 - 1294011..1295285 (-) 1275 ABP90318.1 D-alanine-D-alanine ligase and related ATP-grasp enzymes -
  SSU05_1353 recR 1295336..1295932 (-) 597 ABP90319.1 Recombinational DNA repair protein (RecF pathway) Machinery gene
  SSU05_1354 - 1295941..1298016 (-) 2076 ABP90320.1 Cell division protein FtsI/penicillin-binding protein 2 -
  SSU05_1355 - 1298093..1298842 (-) 750 ABP90321.1 ATPase component of ABC transporters with duplicated ATPase domains -
  SSU05_1356 - 1299005..1299547 (-) 543 ABP90322.1 ABC transporter, ATP-binding protein -
  SSU05_1357 vicX 1300066..1300869 (-) 804 ABP90323.1 Metal-dependent hydrolases of the beta-lactamase superfamily I Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=20180 SSU05_1353 ABP90319.1 1295336..1295932(-) (recR) [Streptococcus suis 05ZYH33]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=20180 SSU05_1353 ABP90319.1 1295336..1295932(-) (recR) [Streptococcus suis 05ZYH33]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCCATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAGTCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATCCAAGAGTATCACGGTCTCTACCATGTATT
GCATGGCTTGATTTCCCCTATGAACGGGATTGGGCCAGACGATATTAACCTGAAAACTCTGCTGACCCGCTTGATGGAAA
ATGAGGTGACAGAGGTGATTGTGGCGACTAATGCAACAGCAGATGGAGAGGCTACATCCATGTATATCTCACGTGTCCTT
AAACCTGCTGGAATCAAAGTAACTAGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment