Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPG_0472 Genome accession   CP001015
Coordinates   467311..468042 (+) Length   243 a.a.
NCBI ID   ACF55022.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 462311..473042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0468 dnaK 462580..464403 (+) 1824 ACF55265.1 chaperone protein DnaK -
  SPG_0469 dnaJ 465033..466169 (+) 1137 ACF55338.1 chaperone protein DnaJ -
  SPG_0470 - 466536..466823 (-) 288 ACF55002.1 conserved hypothetical protein -
  SPG_0471 - 466833..467243 (-) 411 ACF55464.1 histidine triad domain -
  SPG_0472 pptA 467311..468042 (+) 732 ACF55022.1 ABC transporter, ATP-binding protein Regulator
  SPG_0473 - 468039..469088 (+) 1050 ACF56550.1 ABC transporter, permease protein -
  SPG_0474 blpT 469256..469585 (-) 330 ACF55843.1 BlpT protein, fusion -
  SPG_0475 blpS 469862..470200 (+) 339 ACF55842.1 BlpS protein -
  SPG_0476 comE/blpR 470205..470942 (+) 738 ACF55252.1 BlpR response regulator TCS13 Regulator
  SPG_0477 blpH 470956..472296 (+) 1341 ACF56847.1 BlpH histidine kinase TCS13 -
  SPG_0478 blpC 472367..472495 (-) 129 ACF56106.1 bacteriocin BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27139.12 Da        Isoelectric Point: 4.6870

>NTDB_id=20181 SPG_0472 ACF55022.1 467311..468042(+) (pptA) [Streptococcus pneumoniae G54]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVTFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAXXMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=20181 SPG_0472 ACF55022.1 467311..468042(+) (pptA) [Streptococcus pneumoniae G54]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACCGTTGAAAGTGG
GCAGCTGGTTGGTTTGATTGGTCTCAATGGTGCTGGTAAATCGACGACCATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATTAATGGCTTGACCCTGCAAGAAGATGCAACGAGCTACCGCAAGCAAATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACTCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGACTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGANAANATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment