Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AB520_RS07855 Genome accession   NZ_CP017684
Coordinates   1593769..1594743 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain CFSAN007847     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1588769..1599743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB520_RS07815 (AB520_07660) gcvT 1589270..1590361 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  AB520_RS07820 (AB520_07665) - 1590520..1591044 (-) 525 WP_001015125.1 shikimate kinase -
  AB520_RS07825 (AB520_07670) - 1591034..1591180 (-) 147 WP_001789879.1 hypothetical protein -
  AB520_RS07830 (AB520_07675) comGF 1591277..1591774 (-) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB520_RS07835 (AB520_07680) comGE 1591692..1591991 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  AB520_RS07840 (AB520_07685) comGD 1591978..1592424 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB520_RS07845 (AB520_07690) comGC 1592402..1592713 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  AB520_RS07850 (AB520_07695) comGB 1592727..1593797 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB520_RS07855 (AB520_07700) comGA 1593769..1594743 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  AB520_RS07860 (AB520_07705) - 1594795..1595418 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AB520_RS07865 (AB520_07710) - 1595415..1595744 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AB520_RS07870 (AB520_07715) - 1595744..1596730 (-) 987 WP_000161314.1 ROK family glucokinase -
  AB520_RS07875 (AB520_07720) - 1596727..1596930 (-) 204 WP_000087561.1 YqgQ family protein -
  AB520_RS07880 (AB520_07725) - 1596911..1598374 (-) 1464 WP_001017873.1 rhomboid family protein -
  AB520_RS07885 (AB520_07730) - 1598386..1598925 (-) 540 WP_000164553.1 5-formyltetrahydrofolate cyclo-ligase -
  AB520_RS07890 (AB520_07735) rpmG 1599134..1599283 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=201725 AB520_RS07855 WP_000697220.1 1593769..1594743(-) (comGA) [Staphylococcus aureus strain CFSAN007847]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=201725 AB520_RS07855 WP_000697220.1 1593769..1594743(-) (comGA) [Staphylococcus aureus strain CFSAN007847]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTGCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment