Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BSG32_RS07795 | Genome accession | NZ_CP022552 |
| Coordinates | 1564989..1565993 (+) | Length | 334 a.a. |
| NCBI ID | WP_021449318.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain MAVP-R | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1559989..1570993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSG32_RS07775 (BSG32_07785) | aspS | 1560273..1562051 (+) | 1779 | WP_005483110.1 | aspartate--tRNA ligase | - |
| BSG32_RS07780 (BSG32_07790) | ruvC | 1562180..1562701 (+) | 522 | WP_005457261.1 | crossover junction endodeoxyribonuclease RuvC | - |
| BSG32_RS07785 (BSG32_07795) | - | 1562823..1564274 (+) | 1452 | WP_021449319.1 | methyl-accepting chemotaxis protein | - |
| BSG32_RS07790 (BSG32_07800) | ruvA | 1564353..1564967 (+) | 615 | WP_005486097.1 | Holliday junction branch migration protein RuvA | - |
| BSG32_RS07795 (BSG32_07805) | ruvB | 1564989..1565993 (+) | 1005 | WP_021449318.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BSG32_RS07800 (BSG32_07810) | cydA | 1566454..1568040 (+) | 1587 | WP_005457265.1 | cytochrome ubiquinol oxidase subunit I | - |
| BSG32_RS07805 (BSG32_07815) | cydB | 1568058..1569194 (+) | 1137 | WP_005483614.1 | cytochrome d ubiquinol oxidase subunit II | - |
| BSG32_RS07810 (BSG32_07820) | cydX | 1569207..1569314 (+) | 108 | WP_000270284.1 | cytochrome bd-I oxidase subunit CydX | - |
| BSG32_RS07815 (BSG32_07825) | ybgE | 1569307..1569609 (+) | 303 | WP_005495828.1 | cyd operon protein YbgE | - |
| BSG32_RS07820 (BSG32_07830) | ybgC | 1569782..1570201 (+) | 420 | WP_025526803.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| BSG32_RS07825 (BSG32_07835) | tolQ | 1570191..1570889 (+) | 699 | WP_005485405.1 | protein TolQ | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37199.60 Da Isoelectric Point: 4.7025
>NTDB_id=201725 BSG32_RS07795 WP_021449318.1 1564989..1565993(+) (ruvB) [Vibrio parahaemolyticus strain MAVP-R]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQSIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQSIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK
Nucleotide
Download Length: 1005 bp
>NTDB_id=201725 BSG32_RS07795 WP_021449318.1 1564989..1565993(+) (ruvB) [Vibrio parahaemolyticus strain MAVP-R]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAACCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAGCATTGTTCAACGCAGTGCAGATTGCCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCGAACCGTTTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTGGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAGAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAACCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAGCATTGTTCAACGCAGTGCAGATTGCCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCGAACCGTTTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTGGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAGAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
98.503 |
0.596 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.824 |
96.707 |
0.569 |
| ruvB | Streptococcus pneumoniae R6 |
58.824 |
96.707 |
0.569 |
| ruvB | Streptococcus pneumoniae D39 |
58.824 |
96.707 |
0.569 |
| ruvB | Synechocystis sp. PCC 6803 |
55.987 |
92.515 |
0.518 |
| ruvB | Helicobacter pylori 26695 |
54.276 |
91.018 |
0.494 |