Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   SSU05_1025 Genome accession   CP000407
Coordinates   1002741..1003556 (-) Length   271 a.a.
NCBI ID   ABP89991.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 997741..1008556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1023 - 999735..1001570 (-) 1836 ABP89989.1 hypothetical protein -
  SSU05_1024 uvrB 1001573..1002784 (-) 1212 ABP89990.1 Helicase subunit of the DNA excision repair complex Machinery gene
  SSU05_1025 uvrB 1002741..1003556 (-) 816 ABP89991.1 Helicase subunit of the DNA excision repair complex Machinery gene
  SSU05_1026 - 1003748..1004239 (+) 492 ABP89992.1 ABC-type amino acid transport/signal transduction system, periplasmic component/domain -
  SSU05_1027 - 1004250..1005563 (+) 1314 ABP89993.1 ABC-type amino acid transport/signal transduction system, periplasmic component/domain -
  SSU05_1028 - 1005412..1005951 (+) 540 ABP89994.1 ABC-type amino acid transport/signal transduction system, periplasmic component/domain -
  SSU05_1029 - 1005951..1006691 (+) 741 ABP89995.1 ABC-type polar amino acid transport system, ATPase component -
  SSU05_1030 - 1006945..1007436 (-) 492 ABP89996.1 Histone acetyltransferase HPA2 and related acetyltransferases -
  SSU05_1032 - 1007877..1007978 (-) 102 ABP89997.1 hypothetical protein -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 30660.30 Da        Isoelectric Point: 4.6502

>NTDB_id=20165 SSU05_1025 ABP89991.1 1002741..1003556(-) (uvrB) [Streptococcus suis 05ZYH33]
MINRNTENQFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNALVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETVIAKIRRN

Nucleotide


Download         Length: 816 bp        

>NTDB_id=20165 SSU05_1025 ABP89991.1 1002741..1003556(-) (uvrB) [Streptococcus suis 05ZYH33]
ATGATCAATCGAAATACTGAAAACCAATTTAAACTTGTGTCAAAATATGCACCGTCTGGTGACCAGCCCCAAGCCATTGA
AACCTTGGTTGATAACATCGAGGGGGGCGAAAAAGCCCAGATTCTCATGGGGGCGACTGGTACTGGTAAGACCTATACCA
TGAGCCAGGTTATCGCCCGTGTCAATAAGCCAACCTTGGTCATCGCCCACAACAAGACCTTGGCTGGTCAGCTTTATAGT
GAGTTCAAGGAATTCTTTCCAGAAAATGCGGTCGAATACTTCGTGTCTTACTATGATTACTACCAGCCAGAAGCTTATGT
ACCGTCTAGCGATACCTATATCGAAAAGGATAGTTCGGTCAATGATGAGATTGACAAACTCCGTCACTCTGCGACCTCAG
CTCTGCTAGAACGCAATGATGTCATTGTGGTAGCTTCTGTTTCTTGTATCTACGGTTTGGGTTCACCCAAGGAATATTCA
GATAGCGTGGTCAGCCTGCGACCAGGTCAGGAGATTTCCCGTGATCAGTTGCTCAATGCCTTGGTGGATATCCAGTTTGA
GCGGAACGACATCGACTTCCAACGGGGACGGTTCCGTGTGCGTGGCGATGTGGTGGAGATTTTCCCAGCTTCCCGTGACG
AACATGCCTTTCGTGTGGAGTTTTTCGGGGATGAAATCGACCGCATTCGTGAGATTGAAAGCCTGACAGGCAAGGTTTTG
GGCGATGTGGACCACTTGGCCATTTTCCCTGCCACCCACTTCGTGACCAACGATGACCACATGGAAACGGTCATTGCCAA
GATCAGGCGGAACTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(21-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

92.937

99.262

0.923
  uvrB Streptococcus pneumoniae D39

92.937

99.262

0.923
  uvrB Streptococcus pneumoniae TIGR4

92.937

99.262

0.923

Multiple sequence alignment