Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CG712_RS03400 Genome accession   NZ_CP022547
Coordinates   656857..657543 (-) Length   228 a.a.
NCBI ID   WP_071417294.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 651857..662543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS03370 (CG712_03400) - 651937..652512 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  CG712_RS03375 (CG712_03405) - 652877..653848 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  CG712_RS03380 (CG712_03410) - 653852..654964 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  CG712_RS03385 (CG712_03415) - 654966..655313 (+) 348 WP_014608555.1 DUF1831 domain-containing protein -
  CG712_RS03390 (CG712_03420) - 655457..656116 (+) 660 WP_041827076.1 redox-sensing transcriptional repressor Rex -
  CG712_RS03395 (CG712_03425) - 656109..656804 (+) 696 WP_096811574.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  CG712_RS03400 (CG712_03430) radC 656857..657543 (-) 687 WP_071417294.1 RadC family protein Machinery gene
  CG712_RS03405 (CG712_03435) - 657592..659376 (-) 1785 WP_096811575.1 rhamnan synthesis F family protein -
  CG712_RS03410 (CG712_03440) - 659373..660428 (-) 1056 WP_096811576.1 glycosyltransferase family 2 protein -
  CG712_RS03415 (CG712_03445) - 660448..661653 (-) 1206 WP_014727633.1 ABC transporter ATP-binding protein -
  CG712_RS03420 (CG712_03450) - 661653..662462 (-) 810 WP_002948020.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25859.92 Da        Isoelectric Point: 6.6451

>NTDB_id=201604 CG712_RS03400 WP_071417294.1 656857..657543(-) (radC) [Streptococcus thermophilus strain B59671]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLAELSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILY
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=201604 CG712_RS03400 WP_071417294.1 656857..657543(-) (radC) [Streptococcus thermophilus strain B59671]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTGTCTGA
CCAGGAACTGTTGGCGATAGTGCTGCGAACGGGGACTAGGTCTGAGTCGGTTCTATCCATGGCCAATCGTATTTTGAAAG
GGATGACGAGTTTGGCGGAATTGTCTCGCTTGTCTCTGAATGAGCTTCAGGAGATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCTGAGCAGATTATGTCTAG
TCAGCAGGTGGCACGTCGCATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGTAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTGATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.482

98.246

0.575
  radC Streptococcus pneumoniae R6

58.036

98.246

0.57
  radC Streptococcus pneumoniae D39

58.036

98.246

0.57
  radC Streptococcus gordonii str. Challis substr. CH1

57.143

98.246

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443