Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB478_RS08240 Genome accession   NZ_CP017679
Coordinates   1645635..1646321 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN007883     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640635..1651321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB478_RS08220 (AB478_08015) rpsT 1641549..1641800 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  AB478_RS08225 (AB478_08020) holA 1641845..1642819 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  AB478_RS08230 (AB478_08025) comEC 1642876..1645077 (-) 2202 WP_193432398.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB478_RS08235 (AB478_08030) - 1645082..1645543 (-) 462 WP_000439693.1 ComE operon protein 2 -
  AB478_RS08240 (AB478_08035) comEA 1645635..1646321 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  AB478_RS08245 (AB478_08040) - 1646361..1647077 (-) 717 WP_000942456.1 class I SAM-dependent DNA methyltransferase -
  AB478_RS08250 (AB478_08045) rsfS 1647080..1647433 (-) 354 WP_001088020.1 ribosome silencing factor -
  AB478_RS08255 (AB478_08050) yqeK 1647434..1648018 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AB478_RS08260 (AB478_08055) nadD 1648008..1648577 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  AB478_RS08265 (AB478_08060) yhbY 1648580..1648870 (-) 291 WP_000955233.1 ribosome assembly RNA-binding protein YhbY -
  AB478_RS08270 (AB478_08065) aroE 1648874..1649680 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  AB478_RS08275 (AB478_08070) yqeH 1649694..1650794 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=201602 AB478_RS08240 WP_078055782.1 1645635..1646321(-) (comEA) [Staphylococcus aureus strain CFSAN007883]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=201602 AB478_RS08240 WP_078055782.1 1645635..1646321(-) (comEA) [Staphylococcus aureus strain CFSAN007883]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982

Multiple sequence alignment