Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CG712_RS03295 Genome accession   NZ_CP022547
Coordinates   636224..637150 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   Q5M3H5
Organism   Streptococcus thermophilus strain B59671     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 631224..642150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS03265 (CG712_03295) - 631303..632097 (-) 795 WP_096811566.1 HAD-IIB family hydrolase -
  CG712_RS03270 (CG712_03300) - 632281..632658 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  CG712_RS03275 (CG712_03305) - 632663..633361 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  CG712_RS03280 (CG712_03310) - 633373..634157 (+) 785 Protein_640 ABC transporter permease -
  CG712_RS03285 (CG712_03315) - 634207..635136 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  CG712_RS03290 (CG712_03320) amiE 635129..636214 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  CG712_RS03295 (CG712_03325) amiD 636224..637150 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  CG712_RS03300 (CG712_03330) amiC 637150..638643 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  CG712_RS03305 (CG712_03335) amiA 638705..640672 (-) 1968 WP_096811567.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=201600 CG712_RS03295 WP_002946409.1 636224..637150(-) (amiD) [Streptococcus thermophilus strain B59671]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=201600 CG712_RS03295 WP_002946409.1 636224..637150(-) (amiD) [Streptococcus thermophilus strain B59671]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGATTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964

Multiple sequence alignment