Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Spy49_1427c Genome accession   CP000829
Coordinates   1435516..1436007 (-) Length   163 a.a.
NCBI ID   ACI61701.1    Uniprot ID   -
Organism   Streptococcus pyogenes NZ131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1430516..1441007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Spy49_1424 - 1433247..1434191 (+) 945 ACI61698.1 Putative divalent cation transport protein, magnesium transporter, CorA family -
  Spy49_1425 - 1434323..1434979 (+) 657 ACI61699.1 hypothetical protein -
  Spy49_1426c rpsR 1435112..1435351 (-) 240 ACI61700.1 SSU ribosomal protein S18p -
  Spy49_1427c ssb 1435516..1436007 (-) 492 ACI61701.1 Single-strand binding protein 2 Machinery gene
  Spy49_1428c rpsF 1436029..1436319 (-) 291 ACI61702.1 SSU ribosomal protein S6p -
  Spy49_1429c - 1436492..1436785 (-) 294 ACI61703.1 hypothetical protein -
  Spy49_1430 mutY 1436953..1438107 (+) 1155 ACI61704.1 A/G-specific adenine glycosylase -
  Spy49_1431 - 1438284..1438871 (+) 588 ACI61705.1 Transcriptional regulator, Cro/CI family -
  Spy49_1432c trx2 1438923..1439237 (-) 315 ACI61706.1 Thioredoxin reductase -
  Spy49_1433c - 1439318..1439713 (-) 396 ACI61707.1 PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17981.76 Da        Isoelectric Point: 4.8894

>NTDB_id=20160 Spy49_1427c ACI61701.1 1435516..1436007(-) (ssb) [Streptococcus pyogenes NZ131]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=20160 Spy49_1427c ACI61701.1 1435516..1436007(-) (ssb) [Streptococcus pyogenes NZ131]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCCTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment