Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   AB478_RS08005 Genome accession   NZ_CP017679
Coordinates   1599530..1600600 (-) Length   356 a.a.
NCBI ID   WP_000776407.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN007883     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594530..1605600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB478_RS07965 (AB478_07765) gcvPA 1594707..1596053 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AB478_RS07970 (AB478_07770) gcvT 1596073..1597164 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  AB478_RS07975 (AB478_07775) - 1597323..1597847 (-) 525 WP_001015116.1 shikimate kinase -
  AB478_RS07980 (AB478_07780) - 1597837..1597983 (-) 147 WP_001789879.1 hypothetical protein -
  AB478_RS07985 (AB478_07785) comGF 1598080..1598577 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB478_RS07990 (AB478_07790) comGE 1598495..1598794 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  AB478_RS07995 (AB478_07795) comGD 1598781..1599227 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB478_RS08000 (AB478_07800) comGC 1599205..1599516 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AB478_RS08005 (AB478_07805) comGB 1599530..1600600 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB478_RS08010 (AB478_07810) comGA 1600572..1601546 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  AB478_RS08015 (AB478_07815) - 1601598..1602221 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AB478_RS08020 (AB478_07820) - 1602218..1602547 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AB478_RS08025 (AB478_07825) - 1602547..1603533 (-) 987 WP_000161315.1 ROK family glucokinase -
  AB478_RS08030 (AB478_07830) - 1603530..1603733 (-) 204 WP_000087561.1 YqgQ family protein -
  AB478_RS08035 (AB478_07835) - 1603714..1605177 (-) 1464 WP_001017869.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41465.90 Da        Isoelectric Point: 10.1030

>NTDB_id=201598 AB478_RS08005 WP_000776407.1 1599530..1600600(-) (comGB) [Staphylococcus aureus strain CFSAN007883]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIMVSILAIIMKLFYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=201598 AB478_RS08005 WP_000776407.1 1599530..1600600(-) (comGB) [Staphylococcus aureus strain CFSAN007883]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATGGTATCTATATT
GGCTATTATTATGAAATTATTTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGTTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.596

100

0.986
  comGB Staphylococcus aureus N315

98.596

100

0.986

Multiple sequence alignment