Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB478_RS05565 | Genome accession | NZ_CP017679 |
| Coordinates | 1095887..1096357 (+) | Length | 156 a.a. |
| NCBI ID | WP_099143902.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain CFSAN007883 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1085951..1127125 | 1095887..1096357 | within | 0 |
Gene organization within MGE regions
Location: 1085951..1127125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB478_RS05490 (AB478_05315) | - | 1085951..1087336 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| AB478_RS05495 (AB478_05320) | - | 1087543..1088223 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| AB478_RS05500 (AB478_05325) | - | 1088363..1088530 (-) | 168 | WP_000705247.1 | hypothetical protein | - |
| AB478_RS05505 (AB478_05330) | - | 1088732..1089361 (-) | 630 | WP_029549401.1 | LexA family protein | - |
| AB478_RS05510 (AB478_05335) | - | 1089515..1089742 (+) | 228 | WP_015978369.1 | helix-turn-helix transcriptional regulator | - |
| AB478_RS05515 (AB478_05340) | - | 1089765..1090541 (+) | 777 | WP_029549402.1 | Rha family transcriptional regulator | - |
| AB478_RS05520 (AB478_05345) | - | 1090570..1090709 (+) | 140 | Protein_1034 | hypothetical protein | - |
| AB478_RS05525 (AB478_05350) | - | 1090702..1090911 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| AB478_RS05530 (AB478_05355) | - | 1091118..1091348 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| AB478_RS14155 | - | 1091407..1091544 (+) | 138 | WP_001568566.1 | hypothetical protein | - |
| AB478_RS05535 (AB478_05360) | - | 1091528..1091689 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| AB478_RS05540 (AB478_05365) | - | 1091782..1092042 (+) | 261 | WP_029549408.1 | DUF1108 family protein | - |
| AB478_RS05545 (AB478_05370) | - | 1092051..1092314 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| AB478_RS05550 (AB478_05375) | - | 1092323..1094266 (+) | 1944 | WP_099143901.1 | AAA family ATPase | - |
| AB478_RS05555 (AB478_05380) | - | 1094268..1095188 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| AB478_RS05560 (AB478_05385) | - | 1095269..1095886 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| AB478_RS05565 (AB478_05390) | ssbA | 1095887..1096357 (+) | 471 | WP_099143902.1 | single-stranded DNA-binding protein | Machinery gene |
| AB478_RS05570 (AB478_05395) | - | 1096387..1097271 (+) | 885 | WP_099143903.1 | DnaD domain protein | - |
| AB478_RS05575 (AB478_05400) | - | 1097278..1097496 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| AB478_RS05580 (AB478_05405) | - | 1097505..1097909 (+) | 405 | WP_000401972.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB478_RS05585 (AB478_05410) | - | 1097922..1098293 (+) | 372 | WP_061393904.1 | SA1788 family PVL leukocidin-associated protein | - |
| AB478_RS05590 (AB478_05415) | - | 1098294..1098542 (+) | 249 | WP_001126832.1 | phi PVL orf 51-like protein | - |
| AB478_RS05595 (AB478_05420) | - | 1098555..1098956 (+) | 402 | WP_000695766.1 | hypothetical protein | - |
| AB478_RS05600 (AB478_05425) | - | 1098953..1099336 (+) | 384 | WP_053007324.1 | YopX family protein | - |
| AB478_RS05605 (AB478_05430) | - | 1099333..1099683 (+) | 351 | WP_099143904.1 | hypothetical protein | - |
| AB478_RS05610 (AB478_05435) | - | 1099676..1099921 (+) | 246 | WP_099143905.1 | DUF1024 family protein | - |
| AB478_RS05615 (AB478_05440) | - | 1099918..1100454 (+) | 537 | WP_000185693.1 | dUTPase | - |
| AB478_RS05620 (AB478_05445) | - | 1100494..1100697 (+) | 204 | Protein_1055 | DUF1381 domain-containing protein | - |
| AB478_RS05625 (AB478_05450) | - | 1100694..1100897 (+) | 204 | WP_001072795.1 | hypothetical protein | - |
| AB478_RS05630 (AB478_05455) | - | 1100890..1101126 (+) | 237 | WP_000608278.1 | DUF7366 family protein | - |
| AB478_RS05635 (AB478_05460) | - | 1101116..1101505 (+) | 390 | WP_001662395.1 | hypothetical protein | - |
| AB478_RS05640 (AB478_05465) | rinB | 1101502..1101675 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| AB478_RS05645 (AB478_05470) | - | 1101676..1102077 (+) | 402 | WP_033858146.1 | hypothetical protein | - |
| AB478_RS05655 (AB478_05475) | - | 1102429..1102923 (+) | 495 | WP_000594088.1 | terminase small subunit | - |
| AB478_RS05660 (AB478_05480) | - | 1102916..1104139 (+) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| AB478_RS05665 (AB478_05485) | - | 1104136..1105560 (+) | 1425 | WP_031771035.1 | phage portal protein | - |
| AB478_RS05670 (AB478_05490) | - | 1105529..1106479 (+) | 951 | WP_001652283.1 | phage head morphogenesis protein | - |
| AB478_RS05675 (AB478_05495) | - | 1106575..1107159 (+) | 585 | WP_054189012.1 | DUF4355 domain-containing protein | - |
| AB478_RS05680 (AB478_05500) | - | 1107176..1108090 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| AB478_RS14160 | - | 1108102..1108245 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| AB478_RS05685 (AB478_05505) | - | 1108251..1108601 (+) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| AB478_RS05690 (AB478_05510) | - | 1108613..1108948 (+) | 336 | WP_031923493.1 | phage head closure protein | - |
| AB478_RS05695 (AB478_05515) | - | 1108935..1109342 (+) | 408 | WP_001151323.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AB478_RS05700 (AB478_05520) | - | 1109355..1109780 (+) | 426 | WP_000270190.1 | DUF3168 domain-containing protein | - |
| AB478_RS05705 (AB478_05525) | - | 1109781..1110338 (+) | 558 | WP_000057584.1 | hypothetical protein | - |
| AB478_RS05710 (AB478_05530) | - | 1110405..1110911 (+) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| AB478_RS05715 (AB478_05535) | - | 1110956..1111240 (+) | 285 | WP_000880587.1 | hypothetical protein | - |
| AB478_RS05720 (AB478_05540) | - | 1111244..1114129 (+) | 2886 | WP_099143906.1 | terminase | - |
| AB478_RS05725 (AB478_05545) | - | 1114144..1115085 (+) | 942 | WP_031923496.1 | phage tail domain-containing protein | - |
| AB478_RS05730 (AB478_05550) | - | 1115096..1116982 (+) | 1887 | WP_031771031.1 | SGNH/GDSL hydrolase family protein | - |
| AB478_RS05735 (AB478_05555) | - | 1116995..1118893 (+) | 1899 | WP_031771029.1 | hypothetical protein | - |
| AB478_RS05740 (AB478_05560) | - | 1118893..1120716 (+) | 1824 | WP_031771028.1 | phage baseplate upper protein | - |
| AB478_RS05745 (AB478_05565) | - | 1120716..1121093 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| AB478_RS05750 (AB478_05570) | - | 1121097..1121270 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| AB478_RS05755 (AB478_05575) | - | 1121310..1121609 (+) | 300 | WP_000466777.1 | DUF2951 domain-containing protein | - |
| AB478_RS05760 (AB478_05580) | - | 1121746..1123620 (+) | 1875 | WP_099143907.1 | glucosaminidase domain-containing protein | - |
| AB478_RS05765 (AB478_05585) | - | 1123633..1124805 (+) | 1173 | WP_099143908.1 | BppU family phage baseplate upper protein | - |
| AB478_RS05770 (AB478_05590) | - | 1124811..1125206 (+) | 396 | WP_015978410.1 | hypothetical protein | - |
| AB478_RS05775 (AB478_05595) | - | 1125262..1125699 (+) | 438 | WP_029549399.1 | phage holin | - |
| AB478_RS05780 (AB478_05600) | - | 1125680..1127125 (+) | 1446 | WP_001148135.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17637.53 Da Isoelectric Point: 5.2672
>NTDB_id=201588 AB478_RS05565 WP_099143902.1 1095887..1096357(+) (ssbA) [Staphylococcus aureus strain CFSAN007883]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNPNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNPNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=201588 AB478_RS05565 WP_099143902.1 1095887..1096357(+) (ssbA) [Staphylococcus aureus strain CFSAN007883]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CCCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGGCAATCACAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGACGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGCGAGCGCGAGGCAGATTTTATTAATGTCATTGTAT
TTAAAAAACAAGCAGAGAATGTAAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CCCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGGCAATCACAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.018 |
73.077 |
0.417 |
| ssb | Vibrio cholerae strain A1552 |
31.016 |
100 |
0.372 |