Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CGL27_RS38865 Genome accession   NZ_CP022545
Coordinates   9039658..9040746 (+) Length   362 a.a.
NCBI ID   WP_078639877.1    Uniprot ID   -
Organism   Streptomyces sp. 11-1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9034658..9045746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGL27_RS38835 (CGL27_38410) - 9034901..9035458 (+) 558 WP_078639883.1 hypothetical protein -
  CGL27_RS38840 (CGL27_38415) pdxS 9035721..9036641 (+) 921 WP_078639882.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  CGL27_RS38845 (CGL27_38420) pdxT 9036732..9037361 (+) 630 WP_078639881.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  CGL27_RS38850 (CGL27_38425) - 9037477..9038229 (+) 753 WP_078639880.1 YebC/PmpR family DNA-binding transcriptional regulator -
  CGL27_RS38855 (CGL27_38430) ruvC 9038389..9038976 (+) 588 WP_119992291.1 crossover junction endodeoxyribonuclease RuvC -
  CGL27_RS38860 (CGL27_38435) ruvA 9038973..9039593 (+) 621 WP_119992292.1 Holliday junction branch migration protein RuvA -
  CGL27_RS38865 (CGL27_38440) ruvB 9039658..9040746 (+) 1089 WP_078639877.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CGL27_RS38870 (CGL27_38445) yajC 9040970..9041494 (+) 525 WP_119992293.1 preprotein translocase subunit YajC -
  CGL27_RS38875 (CGL27_38450) secD 9041647..9043416 (+) 1770 WP_119992294.1 protein translocase subunit SecD -
  CGL27_RS38880 (CGL27_38455) secF 9043418..9044539 (+) 1122 WP_119992295.1 protein translocase subunit SecF -
  CGL27_RS38885 (CGL27_38460) - 9044556..9045164 (+) 609 WP_237298659.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38158.48 Da        Isoelectric Point: 4.7454

>NTDB_id=201560 CGL27_RS38865 WP_078639877.1 9039658..9040746(+) (ruvB) [Streptomyces sp. 11-1-2]
MNWDETPSATADDAPPGPGGRLVGADADGDDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPG
LGKTTLSMIIAAEMAAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSAGLLDVTIEAEGASEIAGRSRGTPRIANR
LLRRVRDYAQVKADGVITREIAASALAVYDVDERGLDRLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRIGTPAAWAHLGLTPPPQTAGGGQAGLFDG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=201560 CGL27_RS38865 WP_078639877.1 9039658..9040746(+) (ruvB) [Streptomyces sp. 11-1-2]
GTGAACTGGGACGAGACCCCATCGGCCACCGCCGACGACGCCCCGCCCGGCCCCGGCGGCAGGCTGGTGGGCGCCGACGC
GGACGGCGACGACCAAGCGGTGGAGGCCGCGCTGCGCCCGAAGGACCTCGGCGAGTTCGTCGGGCAGGAGCGGGTGCGCG
AGCAGCTGGACCTGGTGCTCAAGGCGGCCCGGCAGCGCGGCGGCACCGCCGATCACGTGCTGCTCTCCGGCGCGCCCGGG
CTGGGCAAGACCACCCTCTCCATGATCATCGCCGCCGAGATGGCCGCCCCGATCCGGATCACCTCCGGCCCCGCCATCCA
GCACGCCGGCGATCTGGCCGCGATCCTCTCCTCCCTCGCCGAGGGCGAGGTGCTCTTCCTGGACGAGATCCACCGGATGT
CCCGGCCCGCCGAGGAAATGCTCTATATGGCGATGGAGGACTTCCGCGTCGACGTCATTGTCGGCAAGGGGCCCGGGGCC
ACCGCCATCCCGCTGGAGCTGCCGCCGTTCACGCTGGTCGGCGCCACCACCCGGGCCGGGCTGCTGCCGCCCCCGCTGCG
CGACCGCTTCGGCTTCACCGGCCATATGGAGTTCTACGCCCCGGCCGAGCTGGAGCGGGTCATCCACCGCTCCGCCGGGC
TGCTCGACGTGACCATCGAGGCCGAGGGCGCCTCCGAGATCGCGGGCCGCTCCCGAGGCACCCCCCGGATCGCCAACCGT
CTGCTGCGCCGGGTGCGGGACTACGCCCAGGTCAAGGCCGACGGCGTGATCACGCGCGAGATCGCCGCCAGCGCCCTCGC
CGTGTACGACGTGGACGAGCGCGGTCTGGACCGGCTGGACCGGGCGGTGCTCAGTGCCCTGCTCAAGCTGTTCGGCGGCG
GCCCGGTGGGTCTGTCGACCCTGGCGGTCGCCGTGGGGGAGGAGCGTGAGACGGTCGAGGAGGTCGCCGAGCCCTTCCTG
GTCCGGGAGGGGCTGCTGGCCCGTACGCCCCGGGGGCGGATCGGCACCCCGGCTGCCTGGGCCCATCTGGGGCTGACCCC
GCCGCCGCAGACCGCCGGCGGCGGCCAGGCGGGGCTCTTCGACGGATGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(273-343)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB AAA lid domain (AAA_lid_4)

(199-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.354

90.608

0.483
  ruvB Streptococcus pneumoniae TIGR4

52.308

89.779

0.47
  ruvB Streptococcus pneumoniae R6

52.308

89.779

0.47
  ruvB Streptococcus pneumoniae D39

52.308

89.779

0.47
  ruvB Synechocystis sp. PCC 6803

53.503

86.74

0.464
  ruvB Helicobacter pylori 26695

49.699

91.713

0.456

Multiple sequence alignment