Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BKN48_RS09965 Genome accession   NZ_CP017676
Coordinates   1891386..1891904 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain VV2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1886386..1896904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS09935 (BKN48_09935) yyaJ 1886889..1888244 (+) 1356 WP_038828056.1 MFS transporter -
  BKN48_RS09940 (BKN48_09940) maa 1888278..1888832 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  BKN48_RS09945 (BKN48_09945) yyaH 1888850..1889230 (-) 381 WP_003244460.1 VOC family protein -
  BKN48_RS09950 (BKN48_09950) ccpB 1889286..1890221 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  BKN48_RS09955 (BKN48_09955) xth 1890280..1891038 (-) 759 WP_070548333.1 exodeoxyribonuclease III -
  BKN48_RS09960 (BKN48_09960) rpsR 1891103..1891342 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BKN48_RS09965 (BKN48_09965) ssbA 1891386..1891904 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BKN48_RS09970 (BKN48_09970) rpsF 1891945..1892232 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  BKN48_RS09975 (BKN48_09975) ychF 1892343..1893443 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BKN48_RS09980 (BKN48_09980) yyaE 1893570..1895573 (-) 2004 WP_070548336.1 molybdopterin-dependent oxidoreductase -
  BKN48_RS09985 (BKN48_09985) yyzM 1895624..1895830 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=201497 BKN48_RS09965 WP_003219228.1 1891386..1891904(-) (ssbA) [Bacillus subtilis strain VV2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=201497 BKN48_RS09965 WP_003219228.1 1891386..1891904(-) (ssbA) [Bacillus subtilis strain VV2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment