Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RB151_RS02665 Genome accession   NZ_CP017671
Coordinates   618288..618812 (+) Length   174 a.a.
NCBI ID   WP_042848855.1    Uniprot ID   A0AA97CN96
Organism   Providencia rettgeri strain RB151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 613288..623812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB151_RS24100 - 614608..614778 (-) 171 WP_158516012.1 hypothetical protein -
  RB151_RS02660 (RB151_005420) uvrA 614993..617827 (-) 2835 WP_042848856.1 excinuclease ABC subunit UvrA -
  RB151_RS02665 (RB151_005430) ssb 618288..618812 (+) 525 WP_042848855.1 single-stranded DNA-binding protein Machinery gene
  RB151_RS24105 (RB151_005440) - 619032..620213 (+) 1182 WP_071547673.1 site-specific integrase -
  RB151_RS24110 (RB151_005450) - 620210..621793 (+) 1584 WP_071547674.1 tyrosine-type recombinase/integrase -
  RB151_RS02680 (RB151_005460) - 621786..623798 (+) 2013 WP_071547675.1 integrase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18726.71 Da        Isoelectric Point: 4.9468

>NTDB_id=201434 RB151_RS02665 WP_042848855.1 618288..618812(+) (ssb) [Providencia rettgeri strain RB151]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDSSSQGQGGQGGWGQPQQPQAQAAQQFSGGGAPARSQAPAPQ
TNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=201434 RB151_RS02665 WP_042848855.1 618288..618812(+) (ssb) [Providencia rettgeri strain RB151]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
TGGGGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGCGATAAGCAAACCGGCGAGATGCGCGAAAAAACAG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCTGAGGTTGCGGGTGAATATTTAAAAAAAGGTTCACAAGTCTACATC
GAAGGTTCTTTGCAAACCCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACCACTGAAGTTGTTGTTAATATCGG
TGGTTCAATGCAAATGCTAGGTGGTCGTGGTGGTGATTCGTCATCACAAGGGCAAGGCGGTCAGGGGGGTTGGGGTCAGC
CTCAGCAGCCACAAGCTCAAGCTGCTCAACAATTTAGTGGCGGTGGTGCGCCAGCTCGTTCACAAGCACCAGCACCACAA
ACTAATGAGCCACCAATGGATTTCGATGATGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.271

100

0.741
  ssb Glaesserella parasuis strain SC1401

58.065

100

0.621
  ssb Neisseria meningitidis MC58

48.315

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.494

Multiple sequence alignment