Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BJP62_RS07775 Genome accession   NZ_CP017668
Coordinates   1637858..1638355 (-) Length   165 a.a.
NCBI ID   WP_070528592.1    Uniprot ID   -
Organism   Jeongeupia sp. USM3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1632858..1643355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP62_RS07755 (BJP62_07755) - 1633571..1634023 (-) 453 WP_070532467.1 spore coat U domain-containing protein -
  BJP62_RS07760 (BJP62_07760) - 1634071..1636443 (-) 2373 WP_070528584.1 fimbria/pilus outer membrane usher protein -
  BJP62_RS07765 (BJP62_07765) - 1636427..1637146 (-) 720 WP_070528587.1 molecular chaperone -
  BJP62_RS07770 (BJP62_07770) - 1637169..1637654 (-) 486 WP_070528589.1 spore coat U domain-containing protein -
  BJP62_RS07775 (BJP62_07775) ssb 1637858..1638355 (-) 498 WP_070528592.1 single-stranded DNA-binding protein Machinery gene
  BJP62_RS07780 (BJP62_07780) - 1638355..1639719 (-) 1365 WP_070528595.1 MFS transporter -
  BJP62_RS07785 (BJP62_07785) uvrA 1639939..1642785 (+) 2847 WP_070528598.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18135.21 Da        Isoelectric Point: 5.9298

>NTDB_id=201389 BJP62_RS07775 WP_070528592.1 1637858..1638355(-) (ssb) [Jeongeupia sp. USM3]
MASLNKVILIGNLGRDPEVRYLPNGDAVCNFSIATTENWKDKSGQKQEKTEWHNITMYRRLAEIAGQYLKKGSSVYIEGK
LQTRKWQDKQTGADRYTTEIIADQMQMLGGRSGGGAPMDQGGGGGYDDFNQSYAPAPAAAPAARPQQAAPAPKRSFDDFE
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=201389 BJP62_RS07775 WP_070528592.1 1637858..1638355(-) (ssb) [Jeongeupia sp. USM3]
ATGGCTTCCTTGAACAAGGTCATCCTGATCGGCAACCTCGGGCGCGACCCCGAGGTGCGCTACCTGCCCAACGGCGACGC
GGTGTGCAATTTCAGCATCGCCACGACCGAAAACTGGAAGGACAAGTCCGGCCAGAAGCAGGAAAAGACCGAGTGGCACA
ACATCACCATGTACCGCCGTCTGGCTGAGATCGCCGGCCAGTACCTGAAGAAGGGCAGTTCGGTCTACATCGAAGGCAAG
CTGCAGACGCGCAAGTGGCAGGACAAGCAGACCGGTGCCGACCGTTACACCACCGAAATCATCGCCGACCAGATGCAGAT
GCTCGGCGGCCGTAGTGGCGGCGGTGCGCCGATGGATCAGGGGGGCGGCGGCGGTTACGACGACTTCAACCAGAGCTACG
CCCCAGCGCCGGCCGCTGCGCCGGCTGCTCGCCCGCAACAGGCTGCACCGGCACCGAAGCGCAGCTTCGACGATTTCGAG
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

57.386

100

0.612
  ssb Glaesserella parasuis strain SC1401

53.191

100

0.606
  ssb Neisseria meningitidis MC58

55.172

100

0.582
  ssb Vibrio cholerae strain A1552

51.934

100

0.57

Multiple sequence alignment