Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CHF17_RS00270 Genome accession   NZ_CP022537
Coordinates   32588..33349 (+) Length   253 a.a.
NCBI ID   WP_001266276.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 874391     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27588..38349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF17_RS00255 (CHF17_00048) - 28898..30223 (+) 1326 WP_000746088.1 CHAP domain-containing protein -
  CHF17_RS00260 (CHF17_00049) - 30347..31315 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  CHF17_RS00265 (CHF17_00050) - 31423..32598 (+) 1176 WP_000171461.1 pyridoxal phosphate-dependent aminotransferase -
  CHF17_RS00270 (CHF17_00051) recO 32588..33349 (+) 762 WP_001266276.1 DNA repair protein RecO Machinery gene
  CHF17_RS00275 (CHF17_00052) - 33412..34290 (+) 879 WP_000420123.1 type II CAAX endopeptidase family protein -
  CHF17_RS00280 (CHF17_00053) plsX 34368..35360 (+) 993 WP_000717414.1 phosphate acyltransferase PlsX -
  CHF17_RS00285 (CHF17_00054) - 35371..35610 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  CHF17_RS00290 (CHF17_00055) purC 35734..36438 (+) 705 WP_000184490.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29682.08 Da        Isoelectric Point: 6.1551

>NTDB_id=201369 CHF17_RS00270 WP_001266276.1 32588..33349(+) (recO) [Streptococcus agalactiae strain 874391]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFYDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=201369 CHF17_RS00270 WP_001266276.1 32588..33349(+) (recO) [Streptococcus agalactiae strain 874391]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGACGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGAATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACCAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTTATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.71

98.024

0.625

Multiple sequence alignment