Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   BKM67_RS08190 Genome accession   NZ_CP017667
Coordinates   1669115..1669759 (+) Length   214 a.a.
NCBI ID   WP_105184118.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664115..1674759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS08165 (BKM67_07985) - 1664776..1666113 (-) 1338 WP_002942867.1 hemolysin family protein -
  BKM67_RS08170 (BKM67_07990) - 1666246..1667025 (+) 780 WP_105184120.1 ABC transporter ATP-binding protein -
  BKM67_RS08175 (BKM67_07995) - 1667041..1667595 (-) 555 WP_105184119.1 class I SAM-dependent methyltransferase -
  BKM67_RS08180 (BKM67_08000) - 1667605..1668123 (-) 519 WP_024375859.1 TetR/AcrR family transcriptional regulator -
  BKM67_RS08185 (BKM67_08005) - 1668245..1669063 (+) 819 WP_024411191.1 cation diffusion facilitator family transporter -
  BKM67_RS08190 (BKM67_08010) cclA/cilC 1669115..1669759 (+) 645 WP_105184118.1 A24 family peptidase Machinery gene
  BKM67_RS08195 (BKM67_08015) - 1669867..1671327 (+) 1461 WP_014638479.1 nicotinate phosphoribosyltransferase -
  BKM67_RS08200 (BKM67_08020) nadE 1671340..1672164 (+) 825 WP_105125737.1 ammonia-dependent NAD(+) synthetase -
  BKM67_RS08205 (BKM67_08025) trpB 1672418..1673593 (-) 1176 WP_044684674.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24213.36 Da        Isoelectric Point: 8.4760

>NTDB_id=201369 BKM67_RS08190 WP_105184118.1 1669115..1669759(+) (cclA/cilC) [Streptococcus suis strain 1081]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLIFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=201369 BKM67_RS08190 WP_105184118.1 1669115..1669759(+) (cclA/cilC) [Streptococcus suis strain 1081]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TATCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.528

99.065

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae D39

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae R6

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae TIGR4

47.17

99.065

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

45.755

99.065

0.453

Multiple sequence alignment