Detailed information NTG0201355

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CGU45_RS24930
• Genome accession: NZ_CP022526
• Coordinates: 5228330..5229334 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Ocean-1155
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5223330..5234334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGU45_RS24900 (CGU45_24900)	fghA	5223422..5224273 (+)	852	WP_003163269.1	S-formylglutathione hydrolase	-
CGU45_RS24905 (CGU45_24905)	ispF	5224344..5224817 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CGU45_RS24910 (CGU45_24910)	truD	5224814..5225881 (+)	1068	WP_023100864.1	tRNA pseudouridine(13) synthase TruD	-
CGU45_RS24915 (CGU45_24915)	surE	5225869..5226618 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CGU45_RS24920 (CGU45_24920)	-	5226651..5227286 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CGU45_RS24925 (CGU45_24925)	-	5227332..5228225 (+)	894	WP_021265159.1	peptidoglycan DD-metalloendopeptidase family protein	-
CGU45_RS24930 (CGU45_24930)	rpoS	5228330..5229334 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CGU45_RS24935 (CGU45_24935)	ltrA	5230135..5231556 (+)	1422	WP_011805433.1	group II intron reverse transcriptase/maturase	-
CGU45_RS24940 (CGU45_24940)	fdxA	5231684..5232007 (-)	324	WP_003092272.1	ferredoxin FdxA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=201355 CGU45_RS24930 WP_003113871.1 5228330..5229334(+) (rpoS) [Pseudomonas aeruginosa strain Ocean-1155]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=201355 CGU45_RS24930 WP_003113871.1 5228330..5229334(+) (rpoS) [Pseudomonas aeruginosa strain Ocean-1155]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653