Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BKM66_RS06635 Genome accession   NZ_CP017666
Coordinates   1351838..1352779 (-) Length   313 a.a.
NCBI ID   WP_105183951.1    Uniprot ID   A0AAD0KV39
Organism   Streptococcus suis strain 0061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1353542..1354798 1351838..1352779 flank 763


Gene organization within MGE regions


Location: 1351838..1354798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS06635 (BKM66_06485) coiA 1351838..1352779 (-) 942 WP_105183951.1 competence protein CoiA family protein Machinery gene
  BKM66_RS06640 (BKM66_06490) - 1352841..1353407 (+) 567 WP_105183952.1 GNAT family protein -
  BKM66_RS06645 (BKM66_06495) - 1353542..1354798 (+) 1257 WP_105137943.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36111.71 Da        Isoelectric Point: 8.6097

>NTDB_id=201307 BKM66_RS06635 WP_105183951.1 1351838..1352779(-) (coiA) [Streptococcus suis strain 0061]
MLVALDEDGQVFNVLENPAPQGSFTCPVCGGLVRYKSGKVLRSHFAHVSLRDCSYFSENESAQHLSLKSSLYNWLAKNEL
VELEKCLPKIGQVADLLVNNSLALEVQCSSLPITRLQARTIAYHVAGYQVVWLLGKDLWLKGRLTNLHKQFLSFSMNMGF
HLWELDDEKNELRLRYLIHEDLRGKVHCLTKVFPFGQGDLLSVLRSPFAKQSLSYFTCSCDQGLLDYVAKQLYYRTPKWM
NLQAEAYQQGKNLLSQSLEDFYPQIRLPRSAIGFAQIKQDLTPIYQAFDRFYDKAKDKSRQILYPPIMYRQFM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=201307 BKM66_RS06635 WP_105183951.1 1351838..1352779(-) (coiA) [Streptococcus suis strain 0061]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTACTTGTCC
AGTTTGTGGAGGCCTGGTCCGATACAAGTCCGGAAAGGTTCTGCGTTCGCACTTTGCCCATGTTTCCCTGCGGGATTGTA
GTTACTTCTCCGAGAATGAGTCCGCCCAGCACCTGTCACTTAAGTCCAGTCTCTATAACTGGTTGGCTAAAAACGAACTG
GTTGAACTTGAAAAATGCCTGCCAAAGATTGGCCAGGTCGCTGATTTATTGGTCAATAATAGTCTGGCCTTGGAAGTTCA
ATGTTCTAGCCTCCCCATTACTCGTTTGCAGGCGAGAACAATAGCCTATCATGTTGCAGGTTATCAGGTTGTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGGACGACTGACCAATTTGCACAAGCAATTTCTCTCCTTTAGTATGAACATGGGTTTT
CATCTGTGGGAGTTAGATGATGAGAAGAATGAGTTAAGACTTCGTTACCTCATTCATGAAGACTTGCGGGGCAAGGTTCA
TTGTCTGACCAAGGTCTTTCCTTTTGGTCAGGGAGATTTGCTGTCTGTTCTTCGGTCACCATTTGCTAAGCAATCCTTGT
CATATTTCACTTGTTCGTGTGATCAGGGCTTGCTAGACTATGTTGCTAAACAACTCTATTACCGTACTCCCAAGTGGATG
AACTTACAGGCGGAGGCCTATCAGCAAGGAAAAAACTTGCTCAGTCAGTCCTTGGAAGACTTCTATCCCCAAATCCGTCT
GCCCCGCTCTGCTATTGGCTTTGCCCAAATCAAGCAAGACCTGACACCGATTTACCAAGCATTTGATCGGTTTTACGACA
AAGCAAAAGATAAGAGTAGACAAATCTTGTATCCACCTATAATGTATAGACAATTTATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.592

100

0.518
  coiA Streptococcus pneumoniae TIGR4

51.274

100

0.514
  coiA Streptococcus pneumoniae Rx1

51.274

100

0.514
  coiA Streptococcus pneumoniae D39

51.274

100

0.514
  coiA Streptococcus pneumoniae R6

51.274

100

0.514
  coiA Lactococcus lactis subsp. cremoris KW2

41.049

100

0.425

Multiple sequence alignment