Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   BKM66_RS02250 Genome accession   NZ_CP017666
Coordinates   452778..453443 (+) Length   221 a.a.
NCBI ID   WP_105120746.1    Uniprot ID   A0AAD0P898
Organism   Streptococcus suis strain 0061     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447778..458443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS02225 (BKM66_02195) - 447989..449389 (+) 1401 WP_032510942.1 Cof-type HAD-IIB family hydrolase -
  BKM66_RS02230 (BKM66_02200) - 449391..449762 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  BKM66_RS02235 (BKM66_02205) cysK 449788..450714 (-) 927 WP_002937015.1 cysteine synthase A -
  BKM66_RS02240 (BKM66_02210) - 450804..451436 (-) 633 WP_015646510.1 YigZ family protein -
  BKM66_RS02245 (BKM66_02215) comFA/cflA 451493..452785 (+) 1293 WP_105183766.1 DEAD/DEAH box helicase Machinery gene
  BKM66_RS02250 (BKM66_02220) comFC/cflB 452778..453443 (+) 666 WP_105120746.1 ComF family protein Machinery gene
  BKM66_RS02255 (BKM66_02225) raiA 453520..454062 (+) 543 WP_014637536.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25775.62 Da        Isoelectric Point: 8.6258

>NTDB_id=201296 BKM66_RS02250 WP_105120746.1 452778..453443(+) (comFC/cflB) [Streptococcus suis strain 0061]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNRGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=201296 BKM66_RS02250 WP_105120746.1 452778..453443(+) (comFC/cflB) [Streptococcus suis strain 0061]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGGG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCGAGGGAAACCTGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484

Multiple sequence alignment