Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BJP61_RS03455 Genome accession   NZ_CP017662
Coordinates   741140..741682 (+) Length   180 a.a.
NCBI ID   WP_007702264.1    Uniprot ID   -
Organism   Cronobacter sp. JZ38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 736140..746682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP61_RS03450 uvrA 738081..740909 (-) 2829 WP_038867366.1 excinuclease ABC subunit UvrA -
  BJP61_RS03455 ssb 741140..741682 (+) 543 WP_007702264.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BJP61_RS03460 - 742110..743156 (+) 1047 WP_171997829.1 GGDEF domain-containing protein -
  BJP61_RS03465 - 743332..743676 (+) 345 WP_038867371.1 hypothetical protein -
  BJP61_RS03470 - 743732..744010 (-) 279 WP_171997830.1 YjcB family protein -
  BJP61_RS03475 - 744592..746199 (+) 1608 WP_144420880.1 EAL domain-containing protein -
  BJP61_RS03480 soxS 746187..746510 (-) 324 WP_004386206.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19291.33 Da        Isoelectric Point: 5.2358

>NTDB_id=201261 BJP61_RS03455 WP_007702264.1 741140..741682(+) (ssb) [Cronobacter sp. JZ38]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=201261 BJP61_RS03455 WP_007702264.1 741140..741682(+) (ssb) [Cronobacter sp. JZ38]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCAACTTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTGGTGCTGTACGGCAAGCTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCGCAGATCTACATC
GAAGGCCAGCTGCGCACCCGTAAGTGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCAACATGGGCGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGCGGCGCACAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAG
CAGCAGGCTCCGGCACCTTCCAATGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.756
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.594
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.483
  ssb Neisseria meningitidis MC58

45.109

100

0.461

Multiple sequence alignment