Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SSU05_1671 Genome accession   CP000407
Coordinates   1588871..1589515 (+) Length   214 a.a.
NCBI ID   ABP90637.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583871..1594515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_1667 - 1585018..1585809 (-) 792 ABP90633.1 pyruvate-formate lyase activating enzyme -
  SSU05_1668 - 1585930..1587267 (-) 1338 ABP90634.1 Hemolysins and related proteins containing CBS domains -
  SSU05_1669 - 1587400..1588179 (+) 780 ABP90635.1 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA -
  SSU05_1670 - 1588195..1588749 (-) 555 ABP90636.1 SAM-dependent methyltransferase -
  SSU05_1671 cclA/cilC 1588871..1589515 (+) 645 ABP90637.1 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Machinery gene
  SSU05_1672 - 1589623..1591083 (+) 1461 ABP90638.1 Nicotinic acid phosphoribosyltransferase -
  SSU05_1673 - 1591096..1591920 (+) 825 ABP90639.1 NAD synthase -
  SSU05_1674 - 1593216..1593743 (-) 528 ABP90640.1 Glycopeptide antibiotics resistance protein -
  SSU05_1676 - 1593740..1594162 (-) 423 ABP90641.1 Predicted Fe-S-cluster redox enzyme -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24215.33 Da        Isoelectric Point: 8.4760

>NTDB_id=20103 SSU05_1671 ABP90637.1 1588871..1589515(+) (cclA/cilC) [Streptococcus suis 05ZYH33]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPVLSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLIFTFIALILSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCT

Nucleotide


Download         Length: 645 bp        

>NTDB_id=20103 SSU05_1671 ABP90637.1 1588871..1589515(+) (cclA/cilC) [Streptococcus suis 05ZYH33]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAACGACGGCTCAAGGCCTGGGACTTAATTCCAGTCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCCGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCATTTTTACTTTTATAGCTCTGATACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTATTTCTTTCAAGTATTCCTATCATTCTGTGCA
CCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.528

99.065

0.491
  cclA/cilC Streptococcus pneumoniae Rx1

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae D39

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae R6

49.029

96.262

0.472
  cclA/cilC Streptococcus pneumoniae TIGR4

47.17

99.065

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

45.755

99.065

0.453

Multiple sequence alignment