Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BGM07_RS19945 Genome accession   NZ_CP022473
Coordinates   2197634..2198638 (-) Length   334 a.a.
NCBI ID   WP_021449318.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-Q     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192634..2203638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM07_RS19915 (BGM07_019960) tolQ 2192738..2193436 (-) 699 WP_005485405.1 protein TolQ -
  BGM07_RS19920 (BGM07_019965) ybgC 2193426..2193845 (-) 420 WP_025526803.1 tol-pal system-associated acyl-CoA thioesterase -
  BGM07_RS19925 (BGM07_019970) ybgE 2194018..2194320 (-) 303 WP_005495828.1 cyd operon protein YbgE -
  BGM07_RS19930 (BGM07_019975) cydX 2194313..2194420 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  BGM07_RS19935 (BGM07_019980) cydB 2194433..2195569 (-) 1137 WP_005483614.1 cytochrome d ubiquinol oxidase subunit II -
  BGM07_RS19940 (BGM07_019985) cydA 2195587..2197173 (-) 1587 WP_005457265.1 cytochrome ubiquinol oxidase subunit I -
  BGM07_RS19945 (BGM07_019990) ruvB 2197634..2198638 (-) 1005 WP_021449318.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BGM07_RS19950 (BGM07_019995) ruvA 2198660..2199274 (-) 615 WP_005486097.1 Holliday junction branch migration protein RuvA -
  BGM07_RS19955 (BGM07_020000) - 2199353..2200804 (-) 1452 WP_021449319.1 methyl-accepting chemotaxis protein -
  BGM07_RS19960 (BGM07_020005) ruvC 2200926..2201447 (-) 522 WP_005457261.1 crossover junction endodeoxyribonuclease RuvC -
  BGM07_RS19965 (BGM07_020010) aspS 2201576..2203354 (-) 1779 WP_005483110.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37199.60 Da        Isoelectric Point: 4.7025

>NTDB_id=200893 BGM07_RS19945 WP_021449318.1 2197634..2198638(-) (ruvB) [Vibrio parahaemolyticus strain MAVP-Q]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQSIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=200893 BGM07_RS19945 WP_021449318.1 2197634..2198638(-) (ruvB) [Vibrio parahaemolyticus strain MAVP-Q]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAACCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAGCATTGTTCAACGCAGTGCAGATTGCCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCGAACCGTTTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTGGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAGAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae R6

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae D39

58.824

96.707

0.569
  ruvB Synechocystis sp. PCC 6803

55.987

92.515

0.518
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494

Multiple sequence alignment