Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CGZ53_RS06230 Genome accession   NZ_CP022435
Coordinates   1222395..1223339 (-) Length   314 a.a.
NCBI ID   WP_046388172.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1217395..1228339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS06210 (CGZ53_06205) - 1217676..1218383 (-) 708 WP_012658707.1 O-methyltransferase -
  CGZ53_RS06215 (CGZ53_06210) - 1218523..1219752 (-) 1230 WP_100912141.1 OFA family MFS transporter -
  CGZ53_RS06220 (CGZ53_06215) - 1219877..1220518 (-) 642 WP_012658709.1 HAD family hydrolase -
  CGZ53_RS06225 (CGZ53_06220) pepF 1220570..1222378 (-) 1809 WP_046388171.1 oligoendopeptidase F Regulator
  CGZ53_RS06230 (CGZ53_06225) coiA 1222395..1223339 (-) 945 WP_046388172.1 competence protein CoiA Machinery gene
  CGZ53_RS06235 (CGZ53_06230) - 1223415..1224560 (-) 1146 WP_046388173.1 MFS transporter -
  CGZ53_RS06240 (CGZ53_06235) - 1224646..1225362 (-) 717 WP_041817639.1 pseudouridine synthase -
  CGZ53_RS06245 (CGZ53_06240) nagB 1225428..1226132 (-) 705 WP_046388175.1 glucosamine-6-phosphate deaminase -
  CGZ53_RS06250 (CGZ53_06245) queA 1226313..1227341 (+) 1029 WP_012658715.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 37566.05 Da        Isoelectric Point: 9.1482

>NTDB_id=200706 CGZ53_RS06230 WP_046388172.1 1222395..1223339(-) (coiA) [Streptococcus uberis strain NZ01]
MLTALDSEGKLCHLLGEFPLSKDYFCPGCGKSLCLKKGKVMRPHFAHKHLRDCHFFSENESVEHLQLKATLYKTISKTED
VRIEKVFPEFGQIADLCINHKLILEVQCSPLPIDRLIERTNAYHREGYMVYWLLGKKLWLRKRLNHLQKQFLAFSWFIGF
YLWELDLEKEELRLHYMIHQNLFGKLCYLTKRCSFKDNIMAFLRLPFQKSCASKMTLHMDQEVIGKIKKSLCRRDKSWLK
RQEDAYLQGKNLLTEPLETFYPQIRPPFSDIPFCQIHENLQSYYESFDHFYQKMKDKKVQTLYPPFLYVKIKEN

Nucleotide


Download         Length: 945 bp        

>NTDB_id=200706 CGZ53_RS06230 WP_046388172.1 1222395..1223339(-) (coiA) [Streptococcus uberis strain NZ01]
GTGTTAACAGCATTGGATTCTGAGGGGAAATTGTGCCATCTTTTAGGTGAGTTTCCTCTTTCAAAGGATTATTTTTGCCC
AGGGTGTGGGAAAAGCTTATGTCTAAAAAAGGGAAAAGTCATGCGTCCTCACTTTGCTCATAAGCATTTAAGGGATTGTC
ACTTCTTTTCTGAAAATGAATCGGTAGAGCATTTACAATTAAAAGCAACTTTATACAAGACCATCAGCAAAACAGAAGAC
GTCCGTATTGAAAAGGTTTTTCCTGAGTTTGGACAGATAGCTGATTTATGTATTAATCATAAGTTAATTTTAGAAGTTCA
ATGTAGCCCTTTACCCATCGACCGCTTAATTGAGAGAACAAACGCATACCATCGTGAAGGGTATATGGTTTATTGGCTTT
TAGGTAAAAAACTTTGGTTAAGAAAGAGATTAAATCACCTGCAAAAACAGTTTTTAGCCTTTTCTTGGTTTATCGGTTTT
TATCTTTGGGAACTAGATTTAGAAAAAGAAGAACTCCGACTACACTATATGATTCATCAAAATTTATTTGGAAAGCTGTG
CTATTTAACCAAAAGATGTTCCTTTAAGGACAATATTATGGCTTTTTTAAGACTCCCTTTTCAAAAAAGCTGTGCTTCAA
AAATGACTCTTCACATGGATCAAGAGGTGATAGGTAAAATCAAAAAATCTTTATGTCGTAGAGACAAATCTTGGCTTAAG
CGACAAGAAGATGCTTACCTTCAAGGTAAGAATTTATTAACAGAACCTCTAGAAACTTTTTATCCTCAAATTAGACCACC
CTTTTCCGACATTCCATTTTGTCAGATTCATGAAAATTTACAGTCATATTATGAATCTTTTGATCATTTTTATCAGAAAA
TGAAAGATAAAAAAGTGCAAACGCTTTATCCTCCATTCCTTTATGTTAAAATAAAAGAGAACTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

46.602

98.408

0.459
  coiA Streptococcus pneumoniae TIGR4

45.631

98.408

0.449
  coiA Streptococcus pneumoniae Rx1

45.631

98.408

0.449
  coiA Streptococcus pneumoniae D39

45.631

98.408

0.449
  coiA Streptococcus pneumoniae R6

45.631

98.408

0.449
  coiA Lactococcus lactis subsp. cremoris KW2

38.08

100

0.392