Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   CGC32_RS05340 Genome accession   NZ_CP022409
Coordinates   1089829..1090839 (+) Length   336 a.a.
NCBI ID   WP_089482776.1    Uniprot ID   -
Organism   Helicobacter pylori strain G272     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1084829..1095839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS05315 (CGC32_05320) - 1085049..1086371 (-) 1323 WP_198360883.1 M23 family metallopeptidase -
  CGC32_RS05320 (CGC32_05325) - 1086381..1087319 (-) 939 WP_089482774.1 outer membrane protein -
  CGC32_RS05325 (CGC32_05330) - 1087328..1088155 (-) 828 WP_050825459.1 outer membrane beta-barrel protein -
  CGC32_RS05330 (CGC32_05335) - 1088145..1088867 (-) 723 WP_089482775.1 hypothetical protein -
  CGC32_RS05335 (CGC32_05340) panB 1089016..1089828 (+) 813 WP_000062698.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CGC32_RS05340 (CGC32_05345) ruvB 1089829..1090839 (+) 1011 WP_089482776.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CGC32_RS05345 (CGC32_05350) tatB 1090907..1091389 (+) 483 WP_089482777.1 Sec-independent protein translocase protein TatB -
  CGC32_RS05350 (CGC32_05355) tatC 1091382..1092128 (+) 747 WP_089482778.1 twin-arginine translocase subunit TatC -
  CGC32_RS05355 (CGC32_05360) queA 1092132..1093169 (+) 1038 WP_089482779.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CGC32_RS05360 (CGC32_05365) rsmG 1093166..1093705 (+) 540 WP_089482780.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  CGC32_RS05365 (CGC32_05370) - 1093699..1093929 (+) 231 WP_089482781.1 PP0621 family protein -
  CGC32_RS05370 (CGC32_05375) - 1093932..1094339 (+) 408 WP_089482782.1 hypothetical protein -
  CGC32_RS05380 (CGC32_05385) - 1094471..1095043 (-) 573 WP_229930191.1 outer membrane protein -
  CGC32_RS05385 (CGC32_05390) - 1095363..1095737 (+) 375 WP_000772151.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37286.29 Da        Isoelectric Point: 6.2615

>NTDB_id=200637 CGC32_RS05340 WP_089482776.1 1089829..1090839(+) (ruvB) [Helicobacter pylori strain G272]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLHQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=200637 CGC32_RS05340 WP_089482776.1 1089829..1090839(+) (ruvB) [Helicobacter pylori strain G272]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGTCATATTATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCCTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCTCTCATCATCAAAAAAGCCGCCGCCAAACTCCACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGGTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.917

100

0.979
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.56

96.131

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

50.789

94.345

0.479