Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SDD27957_10810 Genome accession   CM001076
Coordinates   2060170..2060883 (+) Length   237 a.a.
NCBI ID   EFY03743.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2055170..2065883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_10800 - 2056240..2057868 (-) 1629 EFY03741.1 trehalose-6-phosphate hydrolase -
  SDD27957_10805 - 2057935..2059959 (-) 2025 EFY03742.1 PTS system, trehalose-specific IIBC component -
  SDD27957_10810 treR 2060170..2060883 (+) 714 EFY03743.1 GntR family regulatory protein Regulator
  SDD27957_10815 - 2061165..2061443 (-) 279 EFY03744.1 hypothetical protein -
  SDD27957_10820 - 2061688..2062545 (+) 858 EFY03745.1 glyoxalase family protein -
  SDD27957_10825 - 2062587..2063318 (+) 732 EFY03746.1 hypothetical protein -
  SDD27957_10830 - 2063490..2064104 (-) 615 EFY03747.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SDD27957_10835 - 2064108..2064611 (-) 504 EFY03748.1 acetyltransferase -
  SDD27957_10840 - 2064620..2065555 (-) 936 EFY03749.1 putative oxidoreductase -
  SDD27957_10845 - 2065584..2065730 (-) 147 EFY03750.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27564.72 Da        Isoelectric Point: 9.4757

>NTDB_id=20059 SDD27957_10810 EFY03743.1 2060170..2060883(+) (treR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKQHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDHDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=20059 SDD27957_10810 EFY03743.1 2060170..2060883(+) (treR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATCAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACCAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCAGCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGTTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATCTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCATGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment