Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BJP26_RS02910 Genome accession   NZ_CP017578
Coordinates   584481..585056 (+) Length   191 a.a.
NCBI ID   WP_017980474.1    Uniprot ID   -
Organism   Sphingomonas melonis TY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 579481..590056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP26_RS02890 (BJP26_02895) - 580590..581543 (+) 954 WP_232479636.1 DMT family transporter -
  BJP26_RS02895 (BJP26_02900) - 581540..582210 (+) 671 Protein_596 COQ9 family protein -
  BJP26_RS02900 (BJP26_02905) - 582323..582595 (+) 273 WP_017980472.1 FeoA family protein -
  BJP26_RS02905 (BJP26_02910) feoB 582609..584471 (+) 1863 WP_024310319.1 ferrous iron transporter B -
  BJP26_RS02910 (BJP26_02915) ssb 584481..585056 (+) 576 WP_017980474.1 single-stranded DNA-binding protein Machinery gene
  BJP26_RS02915 (BJP26_02920) - 585071..586594 (+) 1524 WP_017980475.1 sensor histidine kinase -
  BJP26_RS02920 (BJP26_02925) - 586591..586998 (-) 408 WP_017980476.1 response regulator -
  BJP26_RS02925 (BJP26_02930) metW 587084..587671 (-) 588 WP_017980477.1 methionine biosynthesis protein MetW -
  BJP26_RS02930 (BJP26_02935) - 587668..588108 (-) 441 WP_017980478.1 GNAT family N-acetyltransferase -
  BJP26_RS02935 (BJP26_02940) metX 588108..589238 (-) 1131 WP_017980479.1 homoserine O-acetyltransferase MetX -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19453.95 Da        Isoelectric Point: 5.2942

>NTDB_id=200542 BJP26_RS02910 WP_017980474.1 584481..585056(+) (ssb) [Sphingomonas melonis TY]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVNLRIATSESWKDRNSGERKEKTEWHSVAIFNEGLANVAERFLRKGSKVYI
EGQLQTRKWQDQNGQDKYSTEIVLQGFNSVLTMLDGPNGGQGGGGGGRSGGGNDWGGGDDFGGGSSGSYGGGSRGGSSGG
ASGGGRGGFGGGQSGGPGGGFADDLDDDVPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=200542 BJP26_RS02910 WP_017980474.1 584481..585056(+) (ssb) [Sphingomonas melonis TY]
ATGGCAGGCAGCGTCAACAAGGTCATTCTGGTCGGCAACCTGGGGCGCGACCCCGAAAGCCGCAGCTTCCAGAACGGCGG
CAAGGTGGTCAACCTGCGCATCGCCACGTCCGAATCGTGGAAGGACCGCAACAGCGGCGAACGCAAGGAAAAGACCGAAT
GGCATTCGGTCGCGATCTTCAACGAAGGCCTCGCCAACGTCGCCGAGCGATTCCTGCGCAAGGGGTCGAAGGTCTATATC
GAGGGCCAGCTCCAGACCCGCAAATGGCAGGACCAGAACGGTCAGGACAAATATTCGACCGAGATCGTGCTGCAGGGCTT
CAACAGCGTGCTGACCATGCTCGACGGTCCTAACGGCGGCCAGGGCGGCGGCGGTGGCGGCCGTAGCGGTGGCGGCAACG
ACTGGGGCGGCGGCGACGACTTCGGTGGCGGGTCGAGCGGCAGCTACGGCGGCGGCAGCCGTGGCGGTTCGTCTGGTGGT
GCATCCGGCGGCGGCCGTGGTGGCTTCGGCGGCGGGCAGAGTGGTGGTCCGGGCGGCGGCTTCGCCGACGATCTCGACGA
CGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.917

100

0.482
  ssb Vibrio cholerae strain A1552

47.34

98.429

0.466
  ssb Neisseria meningitidis MC58

37.173

100

0.372
  ssb Neisseria gonorrhoeae MS11

36.649

100

0.366

Multiple sequence alignment