Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SDD27957_02965 Genome accession   CM001076
Coordinates   578544..579251 (+) Length   235 a.a.
NCBI ID   EFY02269.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 573544..584251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_02940 - 574104..575654 (+) 1551 EFY02264.1 putative signal recognition particle-docking protein FtsY -
  SDD27957_02945 - 575780..576595 (-) 816 EFY02265.1 hypothetical protein -
  SDD27957_02950 - 576595..577497 (-) 903 EFY02266.1 hypothetical protein -
  SDD27957_02955 - 577644..577760 (-) 117 EFY02267.1 hypothetical protein -
  SDD27957_02960 - 577978..578457 (+) 480 EFY02268.1 hypothetical protein -
  SDD27957_02965 vicR 578544..579251 (+) 708 EFY02269.1 alkaline phosphatase synthesis transcriptional regulatory proteinphoP Regulator
  SDD27957_02970 - 579252..579509 (+) 258 EFY02270.1 histidine kinase PnpS -
  SDD27957_02975 - 579541..580056 (+) 516 EFY02271.1 transposase IS861 orfA -
  SDD27957_02980 - 580092..580889 (+) 798 EFY02272.1 transposase IS861 orfB -
  SDD27957_02985 - 580896..582017 (+) 1122 EFY02273.1 histidine kinase PnpS -
  SDD27957_02990 - 582184..583059 (+) 876 EFY02274.1 phosphate ABC transporter, phosphate-binding protein -
  SDD27957_02995 - 583177..584040 (+) 864 EFY02275.1 phosphate ABC transporter, permease protein PstC -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27549.78 Da        Isoelectric Point: 5.7025

>NTDB_id=20032 SDD27957_02965 EFY02269.1 578544..579251(+) (vicR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTKQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLDGIEVCKRLRAKAIKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSKEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=20032 SDD27957_02965 EFY02269.1 578544..579251(+) (vicR) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACAAAACAAATCTTATTAGTGGATGATGAAGAACATATTTTGAGGCTACTGGATTATCATCTCAGTAAAGAAGGTTT
TTCCACACAATTGGTAACAGATGGACGAAAAGCATTGACATTGGCAGAAACAGAGCCTTTTGACTTTATCCTACTTGATA
TTATGTTGCCTCGGTTAGACGGCATAGAAGTGTGTAAGCGACTAAGAGCTAAAGCTATTAAAACTCCGATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGATAAGGTTTTGGCCTTGGAATTAGGAGCTGATGATTACCTGACAAAGCCTTTTAGCCC
TAGGGAATTAGTAGCTCGTGTCAAGGCTATTTTACGGCGAACCAGTAAAGAGCAGCAAGAAGATGACACAGATGATTTCA
GGGATGATTATCGGGTATTTGGGGCCCTAACCGTCTATCCAGACCGGCATGAGGTTTATAAGGCAGATCATTTATTGAGC
CTTACCCCAAAGGAATTTGAACTCTTACTCTATCTTATGAAACATCCCAACATGACCTTAACTAGGGAACGTTTACTTGA
ACGGATTTGGGGATATGATTTTGGACAAGAAACCCGTTTAGTGGATGTTCATATTGGCAAATTGAGAGATAAGATAGAGG
ATAACCCTAAAGACCCTCAATTTATTCAAACGATTAGAGGCTATGGGTATAAGTTTAAGGAGTTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-232)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

48.718

99.574

0.485
  micA Streptococcus pneumoniae Cp1015

48.246

97.021

0.468
  covR Lactococcus lactis subsp. lactis strain DGCC12653

40.851

100

0.409
  covR Streptococcus salivarius strain HSISS4

40.084

100

0.404

Multiple sequence alignment